Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq1094 84.2 3e-11 seq1090 82.4 9e-11 seq701 82.4 9e-11 >seq1094 Length=3407 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 141684 GTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCAAGTTCTCCGTGG 141743 |||| ||||||||||| |||| ||||||||||||| || ||||| ||| || |||||| Sbjct 2156 GTGGCCGAGTGGTTTAAGGCAGCGGTCTTGAAAACCGCCGTGGGTGGAAGCTCACCGTGG 2097 Query 141744 GTTCAAATCCCACC 141757 |||| ||||||||| Sbjct 2096 GTTCGAATCCCACC 2083 >seq1090 Length=3467 Score = 82.4 bits (90), Expect = 9e-11 Identities = 55/60 (92%), Gaps = 1/60 (2%) Strand=Plus/Minus Query 141337 TTAGCTCAGA-GGTAGAGCATCTCGTTTACACCGAGGCGGTCGGCGGTTCGATCCCGTCA 141395 ||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 1963 TTAGCTCAGTTGGTAGAGCATCTCGTTTACACCGAGAGGGTCGGCGGTTCGAGCCCGTCA 1904 >seq701 Length=18236 Score = 82.4 bits (90), Expect = 9e-11 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 144910 CGACGAGATCTATCAGTTTGCTGCTGATATGGGTGGTGCAGGTTTCGTTTTCACAGGTGA 144969 ||| ||| | ||||| || |||||||||||||| || ||||| | |||| ||||| || Sbjct 6465 CGATGAGGTTTATCAATTAGCTGCTGATATGGGAGGAGCAGGATATATTTTTACAGGAGA 6524 Query 144970 GAATGATGCAGAGATTATGCATAACTCCTGCACT-ATCAACCTGAACGT 145017 ||||||||| | |||||||||||| | || || || ||||| || || Sbjct 6525 TAATGATGCAAATGTTATGCATAACT-CGGCGCTCATTAACCTAAATGT 6572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610378900113840