Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq22 167 3e-36 seq1007 132 6e-26 seq53 104 3e-17 >seq22 Length=406851 Score = 167 bits (184), Expect = 3e-36 Identities = 487/740 (66%), Gaps = 20/740 (3%) Strand=Plus/Minus Query 154374 CATAGTGAAACTGACATGATGAGATATATCTACGAGTTATGCTCTAAAGATTTCTCATTA 154433 |||||||||||||| ||| |||| || ||| || | ||| | | || ||| |||||||| Sbjct 176306 CATAGTGAAACTGAAATGCTGAGGTACATCAACTATTTAAGATAAAAGGATATCTCATTA 176247 Query 154434 GTAAATGGTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAATGCAGCAGCAGAACTA 154493 || ||| || || | || ||||| ||||||||||||||| | | | | Sbjct 176246 ACTAAGTCAATGATTTCATTAGGTAGTTGTACAATGAAATTAAATCCTACTTCTTTCATG 176187 Query 154494 ATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATACAGACC 154553 ||||||| |||| ||| || || | |||||||| | | || || || Sbjct 176186 TTGCCTGTCTCATTTTAAGGATTCTCTTAATTGCATCCATTTTCCCCATTGTCTTGCACT 176127 Query 154554 ATGGGTTATCAGAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTT 154613 || ||| | || | | ||| | | | |||||||||||||| || ||| | | Sbjct 176126 TAAGGATATTAAGAATTGACTGATAATGTTGAAAAATGGTTATGTGACATAACATAGATG 176067 Query 154614 GATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCA 154673 || || |||| ||| ||||| || | || || || ||| |||| | ||| Sbjct 176066 GAGGCTGTATCCTTAATGCCTAATAGTGGTGCTCAAGGAGAATATACAGGTTTATTATGT 176007 Query 154674 ATCCA---AGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCA 154730 || | | || ||| | | || ||| | | | |||||| | ||||| || ||| Sbjct 176006 ATTAAGAAAATATCACATTATGAAT--GGACAAAAGGATAGAAATATTTGTTTAATTCCA 175949 Query 154731 GAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGT 154790 || |||||||| |||||||||||| ||||| | || || | || |||||| Sbjct 175948 ATATCTGCACATGGCACTAATCCTGCTTCAGCTGTTCTTGCCGGATTAAATGTTGTAACA 175889 Query 154791 GTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATG 154850 || || |||||| |||||| | | || | || ||| | | |||||| |||| Sbjct 175888 GTTAA-TGTGATC--GATGGTTATGTTGATTTGAATGATTTGAATAAGAAA---ATCA-- 175837 Query 154851 AATACATTTGAA---CTGT--CATGTATTATGATTACATACCCATCTACACATGGTGTAT 154905 || | | | || || | ||||||| |||||||| || ||||| ||| |||| | | Sbjct 175836 AAGAAAATGAAAAGTCTTTAGCATGTATGATGATTACTTATCCATCAACATATGGAATCT 175777 Query 154906 TTGAA-ACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATAT 154964 |||| | ||| ||| |||| | | | ||||||| |||| || |||||| Sbjct 175776 ATGAAGATTAAACAAAGA-AGATTATTCAACTAATTCATGATCATGGAGGATTAGTATAT 175718 Query 154965 CTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCA 155024 | |||||||| ||| | |||||| |||| ||| || || | | | || || Sbjct 175717 ATGGATGGAGCTAATATGAATGCATAGGTTGGATATACATCTCCTGGATATTTAGGAGCT 175658 Query 155025 GATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCT 155084 ||||| |||||| | || | ||||||||||||| |||||||||||||| || |||||| Sbjct 175657 GATGTTTGTCATTTGAATCTTCATAAAACATTCTCCATTCCACATGGAGGAGGTGGTCCT 175598 Query 155085 GGCGTAGGTCCTATAGGTGT 155104 || |||||||||| | ||| Sbjct 175597 GGATTAGGTCCTATTGCTGT 175578 >seq1007 Length=4367 Score = 132 bits (146), Expect = 6e-26 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 153243 GTCATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAA 153302 || || ||| |||| || | || ||||||||||||||||| |||| || || |||||| Sbjct 2645 GTTATCCAGAGAAATATTTTAGAAAATCCTAGTTGGTACACCGCTTATACACCTTATCAA 2586 Query 153303 GCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAA 153362 || || || | || || ||||| ||||| ||||| ||||||||||| | || || | Sbjct 2585 GCAGAAATTGCACAAGGTAGATTAGAAGCGTTATTGAATTACCAAACATTAATTACCAAT 2526 Query 153363 CTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAA 153422 ||||| || || | |||| || || |||||||||||||| | ||||||||| | ||| Sbjct 2525 CTTACTGGTTTTCATTTAGCGAATGCTTCTCTATTAGATGAGGGAACTGCAGCTTCTGAA 2466 Query 153423 GCAATG 153428 || ||| Sbjct 2465 GCCATG 2460 Score = 111 bits (122), Expect = 2e-19 Identities = 275/412 (67%), Gaps = 14/412 (3%) Strand=Plus/Minus Query 154710 AGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATG 154769 |||||| | ||||| || || | || || || ||||| ||||||||| ||| || || Sbjct 1145 AGAAATATTTGTTTAATTCCTCAATCTGCTCACGGAACCAATCCTGCTTCTGCGGTGATT 1086 Query 154770 GCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGAT 154829 || || | ||||| || | || || | || || || | ||||| || ||||| Sbjct 1085 GCTGGTCTTAAAGTAGTGGTGGTAAAAAATCTAGAAGACGGACAAATAGATTTCGAAGAT 1026 Query 154830 CTAGAGAAGAAAGCA----ATCATGAATACATTTGAACTGTCATGTATTATGATTACATA 154885 || | |||| | ||| || | | || | ||| | | ||||||||||| Sbjct 1025 TTAAAAGCTAAAGTGGAAGAGCATAAAGATAATTTATCTGC----TTTCATGATTACATA 970 Query 154886 CCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGA--TCGTTCAT 154943 |||||||| ||||| | ||||| |||| | | | || || ||| | | || Sbjct 969 TCCATCTACTTATGGTTTCTTTGATGATAACGTAAAA--GAAATTACAGACTTAATCCAC 912 Query 154944 GACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCA 155003 || ||||||||||| || || | ||||| |||||| | ||||| || || || | | Sbjct 911 GAAAATGGTGGTCAAGTTTACATGGATGGTGCAAATATGAATGCTCAAGTTGGCTTCACT 852 Query 155004 AAACCATGTGAGTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTAT 155062 ||| | | ||| ||||||||||| ||||| |||| | || ||||| || || Sbjct 851 TCGCCAGGAAA-TATAGGTGCAGATGTTTGTCACTTAAATCTTCACAAAACTTTTGCAAT 793 Query 155063 TCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACAT 155114 ||| ||||| || || || || || || || || || |||||||||||||| Sbjct 792 TCCTCATGGTGGAGGTGGACCAGGAGTTGGGCCAATTTGTGTAGCAAAACAT 741 >seq53 Length=274744 Score = 104 bits (114), Expect = 3e-17 Identities = 127/169 (75%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 154939 TTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGAC 154998 ||||||| |||| || |||||| | |||||||| ||| | |||||| |||| ||| Sbjct 201006 TTCATGATCATGGAGGATTAGTATATATGGATGGAGCTAATATGAATGCATAGGTTGGA- 201064 Query 154999 TAGCAAAACCATGTGAGTAT---GGTGCAGATGTATGTCATCTAAACTTACATAAAACAT 155055 || | || || || ||| || || ||||| |||||| | || | |||||||||| Sbjct 201065 TATACATCCCCTG-GA-TATTTAGGAGCTGATGTTTGTCATTTGAATCTTCATAAAACAT 201122 Query 155056 TCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||| |||||||||||||| || |||||||| |||||||||| | ||| Sbjct 201123 TCTCCATTCCACATGGAGGAGGTGGTCCTGGATTAGGTCCTATTGCTGT 201171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579195814584640