Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq22 170 2e-37 seq1007 154 2e-32 seq53 98.7 1e-15 >seq22 Length=406851 Score = 170 bits (188), Expect = 2e-37 Identities = 491/742 (66%), Gaps = 24/742 (3%) Strand=Plus/Minus Query 159049 CATAGTGAGACTGACATGATGAGATATATCTATGAGTTAGCATCAAAAGATTTCTCATTA 159108 |||||||| ||||| ||| |||| || ||| | | ||| || ||| ||| |||||||| Sbjct 176306 CATAGTGAAACTGAAATGCTGAGGTACATCAACTATTTAAGATAAAAGGATATCTCATTA 176247 Query 159109 GTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGAACTG 159168 || ||| || || | ||||||||||| |||||| |||| | | || || Sbjct 176246 ACTAAGTCAATGATTTCATTAGGTAGTTGTACAATGAAATTAAATCCTACTTCTTTCATG 176187 Query 159169 ATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATACAGACC 159228 ||||||| |||| ||| || || | |||||||| | | || || || Sbjct 176186 TTGCCTGTCTCATTTTAAGGATTCTCTTAATTGCATCCATTTTCCCCATTGTCTTGCACT 176127 Query 159229 ATGGGTTATCAAAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTT 159288 || ||| || || | | ||| | | | |||||||||||||| || ||| | | Sbjct 176126 TAAGGATATTAAGAATTGACTGATAATGTTGAAAAATGGTTATGTGACATAACATAGATG 176067 Query 159289 GATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCA 159348 || || |||| ||| ||||| || | || || || ||| |||| | ||| Sbjct 176066 GAGGCTGTATCCTTAATGCCTAATAGTGGTGCTCAAGGAGAATATACAGGTTTATTATGT 176007 Query 159349 ATCCA---AGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCA 159405 || | | || ||| | | || ||| | | | |||||| | ||||| || ||| Sbjct 176006 ATTAAGAAAATATCACATTATGAAT--GGACAAAAGGATAGAAATATTTGTTTAATTCCA 175949 Query 159406 GAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGT 159465 || |||||||| ||||||||||| ||||| || | || || | || |||||| Sbjct 175948 ATATCTGCACATGGCACTAATCCTGCTTCAGCTGTTCTTGCCGGATTAAATGTTGTAACA 175889 Query 159466 GTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATG 159525 || || |||||| ||||| | | || | || ||| | | ||||| ||||| Sbjct 175888 GTTAA-TGTGAT--CGATGGTTATGTTGATTTGAATGATTTGAATAAGAA---AATCA-- 175837 Query 159526 AATACATTTGAA---CTGT--CATGTATTATGATTACATATCCATCTACACATGGTGTAT 159580 || | | | || || | ||||||| |||||||| |||||||| ||| |||| | | Sbjct 175836 AAGAAAATGAAAAGTCTTTAGCATGTATGATGATTACTTATCCATCAACATATGGAATCT 175777 Query 159581 TTGA--AACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATA 159638 ||| | ||||| ||| |||| | | | ||||||| |||| || ||||| Sbjct 175776 ATGAAGATTAAACA-AAGA-AGATTATTCAACTAATTCATGATCATGGAGGATTAGTATA 175719 Query 159639 TCTTGATGGTGCAAATCTAAATGCACAGGTAGG-TCTAGCAAAACCATGTGACTATGGTG 159697 | | ||||| || ||| | |||||| |||| || | || || || | | | || | Sbjct 175718 TATGGATGGAGCTAATATGAATGCATAGGTTGGATATA-CATCTCCTGGATATTTAGGAG 175660 Query 159698 CAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTC 159757 | ||||| |||||| | || | ||||| ||||||| |||||||||||||| || |||| Sbjct 175659 CTGATGTTTGTCATTTGAATCTTCATAAAACATTCTCCATTCCACATGGAGGAGGTGGTC 175600 Query 159758 CTGGCGTAGGTCCTATTGGTGT 159779 |||| |||||||||||| ||| Sbjct 175599 CTGGATTAGGTCCTATTGCTGT 175578 Score = 109 bits (120), Expect = 6e-19 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 158444 AAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAG 158503 |||| |||||| | |||||||| | || || || ||||| || |||||||| || Sbjct 176916 AAAGATTTGGTGTACCTATGGGTTTTGGTGGACCACATGCAGCTTTCTTTGCTGTTGAAG 176857 Query 158504 ACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTA 158563 | | | || ||||| || || || | ||| | ||| || |||| | | || | Sbjct 176856 ATGAATTCAAAAGAAAAATGCCAGGACGTATTATTGGTATATCCAAAGATGCCAATGGAA 176797 Query 158564 ATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAA 158623 | ||| || ||| | || |||| |||||||| | |||||||||||||| ||||| | Sbjct 176796 AATCAGCTTATAGAATGTCATTACAAACTAGAGAATAACATATCAGAAGAGAAAAAGCTA 176737 Query 158624 CCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCAT 158683 | || || || ||||| |||||| || |||| |||||| | || || ||||| | | Sbjct 176736 CTTCAAATATTTGTACAGCTCAAGCATTGTTGGCAAATATGGCAGGTTTGTATGCCACTT 176677 Query 158684 ATCATGGT 158691 |||||||| Sbjct 176676 ATCATGGT 176669 >seq1007 Length=4367 Score = 154 bits (170), Expect = 2e-32 Identities = 510/779 (65%), Gaps = 22/779 (3%) Strand=Plus/Minus Query 159022 TTACAACAAGAGGTATTTAAAAAATATCATAGTGAGACTGACATGATGAGATATATCTAT 159081 ||| || |||| || ||||| ||||| |||| ||||| || ||||| | ||||| || Sbjct 1508 TTAAAAGAAGAAGTTTTTAATAAATACCATACAGAGACAGAATTGATGCGTTATAT-TAA 1450 Query 159082 GAGT-TAGCATCAAAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGTAGTTGTAC 159140 | || | | | ||||||||| |||||| || |||| || | || ||| |||||| Sbjct 1449 GCGTCTCGAAAGAAAAGATTTATCATTAACGCATTCTATGATTTCTCTAGGTTCTTGTAC 1390 Query 159141 TATGAAACTAAACGCAGCATCAGAACTGATGCCTGTGTCATGGGAAGAGTTTGCTAACGT 159200 ||||||||| || ||||| ||||| |||| || | || |||||| | | | | Sbjct 1389 TATGAAACTGAATGCAGCTACAGAAATGATTCCACTTTCTTGGGAACATTGGGGCGCAAT 1330 Query 159201 GCATCCACATACACCTATGATACAGACCATGGGTTATCAAAAAATTATAGATGACTTACA 159260 ||||| | || | | || | |||||||| ||| | || | |||| | Sbjct 1329 TCATCCTTTTGTGCCGGTTAATCAAGCTGAAGGTTATCAGAAATTAATCAAA-ACTTT-A 1272 Query 159261 GAAATGGTTATG--TGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGA 159318 |||| | | || | || || || |||| | | ||| | || || || | ||| Sbjct 1271 GAAAAAGATTTGGCTACGATTACTGGTTTTGCGGCAACTTCACTTCAGCCAAATTCTGGA 1212 Query 159319 TCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGG-ATCAGGAGA 159377 | || ||||| ||||| || | | | || |||||| || || ||| || | Sbjct 1211 GCTCAAGGTGAATATGCCGGTTTAATGGTGATTAGAGCATATCAAAAATCTATC-GGTCA 1153 Query 159378 TGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGC 159437 | | | |||||| | ||||| || || | || || || ||||| |||||||| || || Sbjct 1152 AGGTCATAGAAATATTTGTTTAATTCCTCAATCTGCTCACGGAACCAATCCTGCTTCTGC 1093 Query 159438 AGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACAT 159497 ||||| || || | ||||| || | || || | || || || | ||||| | Sbjct 1092 GGTGATTGCTGGTCTTAAAGTAGTGGTGGTAAAAAATCTAGAAGACGGACAAATAGATTT 1033 Query 159498 CAAAGATCTAGAGAAGAAAGCA----ATCATGAATACATTTGAACTGTCATGTATTATGA 159553 | ||||| || | |||| | ||| || | | || | ||| | | |||| Sbjct 1032 CGAAGATTTAAAAGCTAAAGTGGAAGAGCATAAAGATAATTTATCTGC----TTTCATGA 977 Query 159554 TTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTG 159613 |||||||||||||||| ||||| | ||||| ||| | | | || || ||| | Sbjct 976 TTACATATCCATCTACTTATGGTTTCTTTGATGATAACGTAAAA--GAAATTACAGACTT 919 Query 159614 --TTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGG 159671 | || || ||||||||||| || || | |||||||||||| | ||||| || || || Sbjct 918 AATCCACGAAAATGGTGGTCAAGTTTACATGGATGGTGCAAATATGAATGCTCAAGTTGG 859 Query 159672 TCTAGCAAAACCATGTGACTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAGACAT 159730 | | ||| | | ||| ||||||||||| ||||| |||| | || || || | Sbjct 858 CTTCACTTCGCCAGGAAA-TATAGGTGCAGATGTTTGTCACTTAAATCTTCACAAAACTT 800 Query 159731 TCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACAT 159789 | ||||| ||||| || || || || || || || || ||| |||||||||||||| Sbjct 799 TTGCAATTCCTCATGGTGGAGGTGGACCAGGAGTTGGGCCAATTTGTGTAGCAAAACAT 741 Score = 123 bits (136), Expect = 3e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 157918 GTCATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAA 157977 || || ||| |||| || | || ||||||||||||||||| |||| || || |||||| Sbjct 2645 GTTATCCAGAGAAATATTTTAGAAAATCCTAGTTGGTACACCGCTTATACACCTTATCAA 2586 Query 157978 GCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAA 158037 || || || | || || ||||| ||||| ||||| ||||||||||| | || || | Sbjct 2585 GCAGAAATTGCACAAGGTAGATTAGAAGCGTTATTGAATTACCAAACATTAATTACCAAT 2526 Query 158038 CTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAA 158097 || || || | | |||| || || |||||||||||||| | ||||||||| | ||| Sbjct 2525 CTTACTGGTTTTCATTTAGCGAATGCTTCTCTATTAGATGAGGGAACTGCAGCTTCTGAA 2466 Query 158098 GCAATG 158103 || ||| Sbjct 2465 GCCATG 2460 >seq53 Length=274744 Score = 98.7 bits (108), Expect = 1e-15 Identities = 167/232 (72%), Gaps = 9/232 (4%) Strand=Plus/Plus Query 159553 ATTACATATCCATCTACACATGGTG-TATTTGAAAC--AAACATCAGACAGAT-ATGTAA 159608 ||||| |||||||| ||| |||| | | |||| ||||| ||| |||| || ||| Sbjct 200944 ATTACTTATCCATCAACATATGGAAATCTATGAAGATTAAACAA-AGA-AGATTATATAA 201001 Query 159609 GATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGT 159668 | ||||||| |||| || |||||| | ||||| || ||| | |||||| |||| Sbjct 201002 C-TAATTCATGATCATGGAGGATTAGTATATATGGATGGAGCTAATATGAATGCATAGGT 201060 Query 159669 AGG-TCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGA 159727 || | || || || | | | || || ||||| |||||| | || | ||||| | Sbjct 201061 TGGATATA-CATCCCCTGGATATTTAGGAGCTGATGTTTGTCATTTGAATCTTCATAAAA 201119 Query 159728 CATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||| |||||||||||||| || |||||||| |||||||||||| ||| Sbjct 201120 CATTCTCCATTCCACATGGAGGAGGTGGTCCTGGATTAGGTCCTATTGCTGT 201171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588033955398560