Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq56 161 2e-34 seq128 140 7e-28 seq114 140 7e-28 seq454 136 9e-27 seq13 118 2e-21 seq112 100 6e-16 seq260 84.2 5e-11 >seq56 Length=265680 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | |||||||| || ||||||| ||| || ||||| | |||||| Sbjct 113491 TCTTAATCTCAATACTAAATGAAGAGTTGATTCTTTTTAAATGTTATAATCTGAAAGAGT 113432 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || ||||| ||||| || || | || || ||| || |||||||| || Sbjct 113431 TCTTCCATCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGAGGAATTCC 113372 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| |||| ||| || ||| || ||||||||||| ||| ||| || ||||| Sbjct 113371 TTCTTTATCTTAAATCTTAGCCTTAACAGCATCAATGGTGTCTGAAGGTTCTACATCAAG 113312 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||| ||||| ||||| || || | || ||| Sbjct 113311 TGTGATAGTCTTTCCCGTCAAGGTTTTAACAAAAATTTACAT 113270 >seq128 Length=150569 Score = 140 bits (154), Expect = 7e-28 Identities = 168/227 (74%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| || || | || ||||| || ||||||| |||||| ||||| | |||||| Sbjct 58057 TCTTAGTCTTAATACTAAATGGAGAGTTGATTCTTTTTAAATATTATAATCTGAAAGAGT 57998 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||||||||| ||||| ||||| || || | || || || || || ||||| || Sbjct 57997 TCTTCCATCTTCGAGTTGCTTTCCTGCAAAAATCAATCTTTATTAATCAGGTGGAATTCC 57938 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| |||| ||| || ||| || ||||| || || ||| || || ||||| Sbjct 57937 TTCTTTATCTTAAATCTTAGCCTTAACAGCATCAATTGTATCTGAAGGCTCTACATCAAG 57878 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT-TTAT 195144 || | |||||||| |||| ||||| || || | || ||| |||| Sbjct 57877 AGTGATGGTCTTTCCCGTCAGGGTTTTAACAAAAATTTACATATTAT 57831 >seq114 Length=165420 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | || ||||| || || |||| |||||| ||||| | ||| || Sbjct 139728 TCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATATTATAATCTGAAAGTGT 139669 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | | ||| ||||| || || |||| || || || || || || || Sbjct 139668 TCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCC 139609 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || |||| |||||| |||||| ||||||||||| || ||| || ||||| Sbjct 139608 TTCCTTATCTTAAATTTTAGCCTTGACAGCGTCAATGGTGTCTGATGGTTCAACATCAAG 139549 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||| || || ||||| || || | |||||| Sbjct 139548 AGTGATAGTCTTTCCAGTTAATGTTTTAACAAAAATTTGCAT 139507 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | || ||||| || || |||| |||||| ||||| | ||| || Sbjct 153359 TCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATATTATAATCTGAAAGTGT 153300 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | | ||| ||||| || || |||| || || || || ||||| || Sbjct 153299 TCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGAATTCC 153240 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||| |||||| |||||| || || ||||| || ||| || ||||| Sbjct 153239 TTCTTTGTCTTAAATTTTAGCCTTGACAGCATCTATAGTGTCTGATGGTTCTACATCAAG 153180 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || || || ||||| || || | || ||| Sbjct 153179 AGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTACAT 153138 >seq454 Length=44262 Score = 136 bits (150), Expect = 9e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | |||||| || || || |||| ||| || || || | ||| || Sbjct 41499 TCTTAATCTCAAAACTAAGTGAAGTGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGT 41558 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | | || ||||| |||||||||| ||||| || || || || || Sbjct 41559 TCTTCCGTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTGTTAATCGGGTGGGATTCC 41618 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||||| ||||| ||||| ||||| ||||| || ||| || ||||| Sbjct 41619 TTCCTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCAGATGGTTCAACATCAAG 41678 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| ||||||||||| | || |||||||| | || |||| Sbjct 41679 AGTAATTGTCTTTCCTGTGAGTGTCTTTACGAAAATTTACATT 41721 Score = 123 bits (136), Expect = 6e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | |||||| || || || |||| ||| || || || | ||| || Sbjct 41043 TCTTAATCTCAAAACTAAGTGAAGTGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGT 41102 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | | || ||||| |||||||||| || || || || || || || Sbjct 41103 TCTTCCGTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTATTAATCGGGTGGGATTCC 41162 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||||| ||||| ||||| ||||| ||||| || ||| || ||||| Sbjct 41163 TTCCTTGTCTTAGATTTTGGCTTTGACAGCATCAATTGTGTCAGATGGTTCAACATCAAG 41222 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| ||||||||||| | || || || || | || |||| Sbjct 41223 AGTAATTGTCTTTCCTGTGAGTGTCTTGACAAAGATTTACATT 41265 Score = 123 bits (136), Expect = 6e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | |||||| || || || |||| || || ||||| | ||| || Sbjct 41271 TCTCAATCTCAAAACTAAGTGAAGTGTTGATTCCTTTTAGATGTTATAATCTGAAAGTGT 41330 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | | || || ||||||||||||| || || || || || || || Sbjct 41331 TCTACCATCTTCTAATTATTTTCCAGCGAAGATAAGTCTTTATTAATCGGGTGGGATTCC 41390 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||||| ||||| ||||| ||||| ||||| || ||| || ||||| Sbjct 41391 TTCCTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCAGATGGTTCAACATCAAG 41450 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| || |||||||| | || || || || | || |||| Sbjct 41451 AGTAATAGTTTTTCCTGTGAGTGTCTTGACAAAGATTTACATT 41493 >seq13 Length=521119 Score = 118 bits (130), Expect = 2e-21 Identities = 163/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||||||||| || | ||||| || || ||||||| ||| || ||||| | |||||| Sbjct 46025 TCTGAGTCTCAATACTAAATGAAGTGTTGATTCTTTTTAAATGTTATAATCAGAAAGAGT 46084 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | | ||| || || || || | || || || || ||||| || || Sbjct 46085 TCTTCCATCCTCTAATTACTTTCCAGCAAAAATTAATCTTTATTAATCAGGAGGGATTCC 46144 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||| || ||| ||| || || ||||| ||||| || || ||||| Sbjct 46145 TTCTTTGTCTTAGATCTTTGCCTTAACAGCATCGATGGTATCCGATGGCTCAACATCAAG 46204 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT-TTAT 195144 || | ||||| ||||| | || || || || | || ||| |||| Sbjct 46205 TGTGATGGTCTTGCCTGTGAGGGTCTTAACAAAAATTTACATATTAT 46251 >seq112 Length=167324 Score = 100 bits (110), Expect = 6e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||||||||| || | || ||||| || ||||||| ||||| ||||| | |||||| Sbjct 45493 TCTGAGTCTCAATACTAAATGGAGAGTTGATTCTTTTTAGATATTATAATCTGAAAGAGT 45434 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | ||||| || || || || | || || || || ||||| || || Sbjct 45433 TCTTCCATCCTCCAATTGCTTTCCAGCAAAAATTAATCTTTATTAATCGGGAGGGATTCC 45374 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| | || ||| ||| || || || || || || || || ||||| Sbjct 45373 TTCCTTGTCCTAGATCTTTGCCTTAACAGCATCGATAGTATCAGATGGCTCAACATCAAG 45314 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT-TTAT 195144 || | ||||| || || | || || || || | || ||| |||| Sbjct 45313 TGTGATGGTCTTACCCGTAAGGGTCTTAACAAAAATTTACATATTAT 45267 >seq260 Length=80851 Score = 84.2 bits (92), Expect = 5e-11 Identities = 154/224 (69%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | ||| | || || || |||| ||||| ||||| | ||| | Sbjct 28235 TCTCAATCTTAAAACTAAGTGTAATGTTGATTCCTTTTAGATATTATAATCTGAAAGCTT 28176 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | | ||| ||||| || || |||| || || || || ||||| || Sbjct 28175 TCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGAATTCC 28116 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT--TCCACTTCA 195096 ||| || | | |||| | || || | |||||||||| || || || || || Sbjct 28115 TTCCTTATTCTAGATTTAGTTTTTAACTTCATCAATGGTGT--GATCTGGATCAACATCT 28058 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || | ||||||||||| | ||||| || || | || ||| Sbjct 28057 AAAGTGATTGTCTTTCCTGTAAGGGTTTTAACAAAAATTTACAT 28014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109448251063382