Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq454 105 4e-18 >seq454 Length=44262 Score = 105 bits (116), Expect = 4e-18 Identities = 176/252 (70%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 34733 ACATATGCATA--TCCAATCATTT-CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCT 34789 ||||||| ||| | ||||||| ||||| || || |||||||| ||||||| ||| Sbjct 41013 ACATATGGATAGTTTAAATCATTAGCCTCCTCTTAATCTCAAAACTAAGTGAAGTGTTGA 41072 Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || | |||||||||||| ||||| ||| | | || || | | |||||| ||||| Sbjct 41073 TTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCGTCTTCTAATTATTTTCCTGCAAA 41132 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| || | || | || | || |||||||| || || |||||| | Sbjct 41133 GATAAGTCTTTATTAATCGGGTGGGATTCCTTCCTTGTCTTAGATTTTGGCTTTGACAGC 41192 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| | |||||||| | || || || ||||| ||||| ||||| || Sbjct 41193 ATCAATTGTGTCAGATGGTTCAACATCAAGAGTAATTGTCTTTCCTGTGAGTGTCTTGAC 41252 Query 34970 AAAGATCTGCAT 34981 |||||| | ||| Sbjct 41253 AAAGATTTACAT 41264 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| || || |||||||| ||||||| ||| ||| || | |||||||||||| | Sbjct 41492 TTCCTCCTCTTAATCTCAAAACTAAGTGAAGTGTTGATTCCTTTTAAATGTTATAGTCTG 41551 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| | | || || | | |||||| ||||| || |||| ||| | || | | Sbjct 41552 AAAGTGTTCTTCCGTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTGTTAATCGGGTG 41611 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| || || |||||| | | || | ||| | |||| Sbjct 41612 GGATTCCTTCCTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCAGATGGTTCAA 41671 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| | || || || ||||| ||||| ||||| || || || | ||| Sbjct 41672 CATCAAGAGTAATTGTCTTTCCTGTGAGTGTCTTTACGAAAATTTACAT 41720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324624318116688