Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq392 104 3e-17 seq85 93.3 6e-14 >seq392 Length=52916 Score = 104 bits (114), Expect = 3e-17 Identities = 121/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 126587 ATTACGTATACCAGAAATTGGAGACAAATTTTGTTCTGGA-ATGGCCCAAAAAGGAACTT 126645 |||| | || || |||||||||| ||||||||| | || |||| |||| || |||| Sbjct 5319 ATTAAGAATTCCTTAAATTGGAGATAAATTTTGTAGTAGACATGGAT-AAAAGGGTACTT 5261 Query 126646 GTGGTATGATTTATGCACAAGAAGATATGCCGTTTACACAATCAGGTATGACCCCCGATA 126705 |||| |||| |||| |||||||||| | || | ||| | |||||| | || ||| Sbjct 5260 GTGGAATGACTTATAGACAAGAAGATTTACCATATACTCTTGTAGGTATATCTCCAGATC 5201 Query 126706 TTATAATTAATCCAAATTGTATACCGTCAAGAATGACCATA 126746 | | ||||||||| ||||||| || ||||||||||| ||| Sbjct 5200 TAACTATTAATCCACATTGTATTCCATCAAGAATGACAATA 5160 >seq85 Length=202968 Score = 93.3 bits (102), Expect = 6e-14 Identities = 181/263 (69%), Gaps = 12/263 (5%) Strand=Plus/Minus Query 126945 ATTTTTAT--AGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATGC 127002 || ||||| |||||| | | ||| | | ||||| |||||||||| ||||||||| | Sbjct 63943 ATGTTTATTAAGGTCCTATTTTTTATTAAAGACTTAAGCATATGGTTATAGATAAAATTC 63884 Query 127003 ATGCTAGAAGTCATGGTCAAGTAACAACATTACATCGTCAACCAAACTGT----GGTCGT 127058 |||| ||| | | |||| | | || | || |||| |||| ||| || | Sbjct 63883 ATGCCAGAGCTAAAGGTCCAATGGAAAAACTAACTCGTTAACC----TGTTGAAGGAAGA 63828 Query 127059 TCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGA 127118 || ||| |||||||| | ||||||||||||||| ||||||| |||| | | |||| Sbjct 63827 GCCAAAGATGGTGGATAGCGTATTGGAGAAATGGAAAGAGATTGTTTTTTAGCTTATGGT 63768 Query 127119 GCCACACAATTTTTAAATGAAAGAATGTTTTTATGTTCAGATCCTTTTCAAATTG-ATGT 127177 || || | || |||| ||| ||| | || | | | ||||| ||||| || |||| Sbjct 63767 GCATCAAATTTATTAATTGAGAGATTATTGATTTCTAGTGATCC-ATTCAATGTGTATGT 63709 Query 127178 GTGTACAAATTGTGGAATGATTA 127200 ||| || ||||||||| ||| Sbjct 63708 TTGTGAAATATGTGGAATGTTTA 63686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658383892326160