Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_016770.1 Length=47159 Score E Sequences producing significant alignments: (Bits) Value seq711 134 4e-27 >seq711 Length=17244 Score = 134 bits (148), Expect = 4e-27 Identities = 471/717 (66%), Gaps = 25/717 (3%) Strand=Plus/Minus Query 3266 TTATAATTTACTATCTTAATATCTTCATACTTAAAATCGAATATATTACGAACATTCGGG 3325 || |||||| ||| | ||| ||||||| | | ||||| |||| || || | |||| Sbjct 10307 TTGTAATTTTCTAACGTAAAATCTTCAAAATCGAAATCAAATAAATCTTTAATTTCCGGG 10248 Query 3326 TTTAATTCCAATTTGGGAAGGGCGAACGGCTCTCTACTCAATTGTTCTTTCACCTGTTCA 3385 || | || || | || | || ||| || | | | ||| ||| ||||| ||| Sbjct 10247 TTGAGTTTCATGGTTGGCAATGCTCTCGGTTCCCGAGAAAGTTGCAATTTTACCTGCTCA 10188 Query 3386 ACGTGATTCAAATATATATGTCCGTCCCCGATAGTGTGAATG-AATCTACGAGGCTT-TA 3443 | || || || ||||| | || || | ||| || | ||||| | | ||| || Sbjct 10187 AAATGGTTGTTGTAAATATGAACATCTCCAAAAGTATGCACATAATCTCCTA--CTTCTA 10130 Query 3444 AGCCGCAAACCTGCGCTACCAT-AGACAGCAAGATAGAATAAGACGCAATGTTGAAAGGA 3502 | | ||||| ||||| ||||| | ||| ||| | | |||| ||||||||| ||||| Sbjct 10129 ATTCACAAACTTGCGCCACCATCATACA-CAACAATGCATAACTCGCAATGTTAAAAGGG 10071 Query 3503 ACGCCTAAAAATAGGTCTGCACTTCTTTGATACAGTTTCAAATCCAAATAACCGGACTCA 3562 ||||| ||||||| || |||||||||||||||| || | ||| | || || Sbjct 10070 ACGCCCAAAAATACATCAGCACTTCTTTGATACAATTGTAGTGACAATTTTCC---ATCT 10014 Query 3563 GACACATAGAACTGAAA-AAAGCAGTGGCACGGAGGAAGTGCCATCATGTGTATTTCTCC 3621 | ||||| |||||||| || ||| || || || | | ||||| | | ||||| | Sbjct 10013 GCTACATAAAACTGAAACAATGCA-TGACAAGGCGCTAAAGCCATATTTGGAATTTCGGC 9955 Query 3622 AACATTCCAAGCACTAACAATTAACCTTCTTGACTTCGGGTTGAACTTAATCATATCTA- 3680 ||||||||||| ||| || | ||||| || | || || ||| || |||| Sbjct 9954 TGCATTCCAAGCAGAAACGATAAGTCTTCTAGAATCAGGATTTTTCTTGATTTGCTCTAC 9895 Query 3681 TAACTGAATCAATTTGATCTA-CTCTTAACTTGCTATTTATACGCCAGTCACGCCATTGT 3739 || || | | ||||| |||| | ||| | || | | | | ||| | ||||||| Sbjct 9894 TACCTCTA-CGATTTGGTCTACCACTTTTCCATCTTTGCCTTCCCAAGT-TCTCCATTGT 9837 Query 3740 TTACCGTATATACGTCCAAGATCACCGGAAGGCTTTGCCCATTCGTCCCAAATATGAACA 3799 ||||| | | ||||||| || | ||||||||| | |||||| |||| Sbjct 9836 GCTCCGTAAACTGGACCAAGATTTCCATTTTCGTCTGCCCATTCATTCCAAATGGAAACA 9777 Query 3800 CCACTTTCATTTAGGTATTTTATATTGGTGTCTCCTTTTAACATCCAAAGAAGCTCATAT 3859 ||| | || | || ||||| || || || || ||||||| | |||||| | ||||| Sbjct 9776 CCATTATCTGTAAGATATTTGATGTTTGTATCGCCTTTTAGAAACCAAAGCAATTCATAA 9717 Query 3860 ATAATTCCCTTCGTGAAT--ACCTTCTTAGTTGTGACAAGCGGGAAACCGTCACGCAAAT 3917 ||||| ||| | ||| || || || || || || | || ||||| | | ||||| Sbjct 9716 ATAATAGACTT--TAAATGCACTTTTTTGGTCGTTACCAAAGGAAAACCCTTAGACAAAT 9659 Query 3918 CATAAGATCG---TTGTAAACCGAATAAGCTAATAGTTCCCGTTCCTGTTCGATCTG 3971 ||| |||| ||| |||| || | || | |||||||||||||||| |||| Sbjct 9658 CAT---ATCGCAATTGGTAACCAAAAACACTTCTGGTTCCCGTTCCTGTTCTGTCTG 9605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150782999257092