Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq253 361 6e-95 seq25 345 5e-90 seq138 91.5 2e-13 >seq253 Length=82967 Score = 361 bits (400), Expect = 6e-95 Identities = 666/972 (69%), Gaps = 46/972 (5%) Strand=Plus/Minus Query 36829 AAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACTCCCATTTTTT 36888 |||| || |||| | |||||| | | |||| || || |||| ||||| ||||| Sbjct 29973 AAAAGTCAGCATCCATAGTAAATACTTTATCCTATTTTTTACTCATGACTCCAGCTTTTT 29914 Query 36889 GATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCCA 36948 ||| |||||||||| ||||||||||||||| || || |||| || ||||| | |||| Sbjct 29913 AATAATCTCCAACTCTTCTTTCGAAAAAATTAGTTTTACCTTGTAAAGATATCATATCCA 29854 Query 36949 TAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCAGAAGCC 37008 | | ||||| ||||| || |||||| || || | | |||| | | | | Sbjct 29853 TCCATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCAAATATTAATC 29794 Query 37009 TATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTA 37068 |||| ||||||||||| || |||| ||| | | | | || |||||||||| || || Sbjct 29793 TATCTGCAACAAATTCAATATATTATTTCATCATATTAGAATTCATACCAATTAATTCTA 29734 Query 37069 CTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAA 37128 ||| | || || || |||| |||||| ||| |||||| | || ||| | | Sbjct 29733 CTGATAAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGCAGATGAAATTATTTCAT 29674 Query 37129 CAATAACTTCTTCAGTTGGGGGAT--ATT--TTAAATATTTAAACAATAAACATGCAAAA 37184 ||| |||| | || || ||| |||||| ||| | | || ||| || || Sbjct 29673 GAAT----TCTTTAATTACTTAATTTATTGATTAAATGTTTGTAAAGTAGACAAGCGAAG 29618 Query 37185 TCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATT 37244 || ||| | |||||||||||| || |||||||| ||||| || | ||| ||||| Sbjct 29617 TCTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTGAGTCCAGGCATC 29558 Query 37245 AAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCA 37304 || ||||||||| ||||| || || || ||| || ||||||||||| ||||||||| Sbjct 29557 AATGATCTTTTTTTTATCCAGAAAATGGCACAAAATGAACCAGAAAAGAATATACCTTCA 29498 Query 37305 ACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttt 37364 || | ||||| || | | | | | | || |||| || |||| ||||||||| Sbjct 29497 ACAGAAGCAAAAGCAATTAATCTTTCAGCAAA---TGAATCATTATCATTAATCCATTTC 29441 Query 37365 tttGTCCAATCTGCCTTTAATT-TAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAA 37423 | | ||| |||||| || || ||| || | | ||||| || | | ||| | Sbjct 29440 ATAGCCCACATTGCCTTCTTTTGTATAACAGGCACAT-TATCAATAGCATGAAGTAGATA 29382 Query 37424 GtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTG 37483 |||||||| | ||| ||||| ||||||||||| | || ||| |||| || || Sbjct 29381 ATTTTTTTCATTTTCATCAGTTATGTAAGTATCAATCAATAGTGAATAGGTTTCTGAATG 29322 Query 37484 AATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATC 37543 |||||| || ||||||| || ||| ||||| ||||| |||||||| | | || ||| || Sbjct 29321 AATATTCTCCATAGCTAACTAAAATCCATAGAAACATCTAGCTTCTGGAACTTAAACTTC 29262 Query 37544 GTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGC 37603 || |||| | ||| ||||||||||| || || |||||||||||||||||||| || Sbjct 29261 TGTACAAAATTATTAAGCCAAGTTTTCATTCACAATACCATCACTAGCTGCAAAGAAGGC 29202 Query 37604 AAGAACATATTTTATAAAATGTCTTTCATCATTTGATAA-TTTTTTCCAATCATTAATAT 37662 ||| ||||| || |||||||| ||||||| | | ||| ||||| |||||| |||| || Sbjct 29201 AAGTACATACTTAATAAAATGCTTTTCATC-TGAGGTAAGTTTTTCCCAATCTTTAAGAT 29143 Query 37663 C------TTTT-----------------------GATAAATCAACTTCATCAACGGTCCA 37693 | |||| ||||||| | ||| ||| | ||||| Sbjct 29142 CCTAAAATTTTATTACTTTTATTATCTTACTTAATATAAATCTATTTCTTCAGCTGTCCA 29083 Query 37694 AAAACTTGC-CAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATA 37752 |||||||| ||| ||||||||| ||||||||||||| | || |||||||| | Sbjct 29082 GAAACTTGCTTTATG-TTATTTATACATATTCCAAATATCATTGTATTTAATTGGAAAGA 29024 Query 37753 TTACAAATCTAT 37764 ||||||||||| Sbjct 29023 GTACAAATCTAT 29012 >seq25 Length=399112 Score = 345 bits (382), Expect = 5e-90 Identities = 665/975 (68%), Gaps = 47/975 (5%) Strand=Plus/Minus Query 36829 AAAAATCTTCATCTAACGTAAAT--TTTATTTCCTTATTACTATTCATAACTCCCATTTT 36886 |||| || |||| | |||||| ||||| | || || || |||||||||| ||| Sbjct 189061 AAAAGTCAGCATCCATAGTAAATACTTTATCTTATTTTT--TACTCATAACTCCAGCTTT 189004 Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 ||| || |||||||||| ||||||||| ||||| || || |||| || || || | || Sbjct 189003 TTGGTAATCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGAGATCATATC 188944 Query 36947 CATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCAGAAG 37006 ||| | ||||| ||||| || |||||| || || | | |||| | | | Sbjct 188943 CATCCATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAATGCAAATATTAA 188884 Query 37007 CCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTT 37066 ||||| || |||||||| || |||| ||||| | | | || || ||||||| || Sbjct 188883 TCTATCTGCTACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAATTC 188824 Query 37067 TACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATT 37126 ||||| | || || | |||| |||||| ||| |||||| | || || | Sbjct 188823 AACTGGTAGAGCTTCACTGATAAATTCTTTTTCAATTTCAACAGCAGATGAAATAATTTC 188764 Query 37127 AACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATC 37186 | ||| || | | || || ||||| ||| | | | ||| || || || Sbjct 188763 ATGAATTCGTTAATTACTTAATTTATTAACTAAATGTTTGTAAAGAAGACAAGCGAAGTC 188704 Query 37187 ACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAA 37246 ||| | |||||||||||| || |||||||| |||||||| | ||| ||||| || Sbjct 188703 TGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCAGGCATCAA 188644 Query 37247 ACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAAC 37306 ||||||||| ||||||||||| || ||| || |||||||||||||| |||||||| Sbjct 188643 TGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAAATGCCTTCAAC 188584 Query 37307 TGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttt 37366 | ||||| || | | | | | | || |||| || || | ||||||||| | Sbjct 188583 AGAAGCAAAGGCAATTAATCTTTCAGCAAA---TGAATCATTATTATTAATCCATTTCAT 188527 Query 37367 tGTCCAATCTGCCTTTAATTTAAC--ACATTCAATTGTTTCAATTGCTTTTAAGAGAAAG 37424 || ||| ||| ||| ||||| ||| || | | || || || | | ||| || Sbjct 188526 TGCCCACATTGC-TTTCTTTTAAATTACAGGCACAT-TATCTATAGCATGGAGAAGATAG 188469 Query 37425 tttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT--ATACATTTCAGAGT 37482 |||||||| | ||| |||||||| |||||||| | ||| | ||| ||||||| | Sbjct 188468 TTTTTTTCATTTTCATCAGTTATATAGGTATCAATCA--AAAGTGAATATGTTTCAGAAT 188411 Query 37483 GAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACAT 37542 ||||||| || ||||| || | ||| ||||||||||| |||||||||| | ||| || | Sbjct 188410 GAATATTCTCCATAGCCATTTAAAATCCATAAAAACATCTAGCTTCAGGAACTTGTACTT 188351 Query 37543 CGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAG 37602 | || | || | ||| ||||||||||| ||||| |||||||| ||||||||||||| Sbjct 188350 CTGTACAGAATTATTAAGCCAAGTTTTCATTTACTATACCATCACTTGCTGCAAAGAAAG 188291 Query 37603 CAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATAT 37662 |||| ||||| || ||||| || ||||||| | | ||||| |||||| |||| || Sbjct 188290 CAAGGACATACTTAATAAAGTGCTTTTCATCTGAGGTGAGTTTTTCCCAATCTTTAAGAT 188231 Query 37663 C------TTTT----------------------GATAAATCAACTTCATCAACGGTCCAA 37694 | |||| | ||||| | ||| ||| | ||||| Sbjct 188230 CCTAAAATTTTATTACTTTAATATAATACCTAATACAAATCTATTTCTTCAGCTGTCCAG 188171 Query 37695 AAACTTGC-CAATG-CACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATA 37752 |||||||| ||| || |||||||| ||||||||||||||| || |||||||| | Sbjct 188170 AAACTTGCTTTATGTTAC--TTATACATATTCCAAATATCATTATATTTGATTGGAAAGA 188113 Query 37753 TTACAAATCTATCAG 37767 ||||||||||| || Sbjct 188112 GTACAAATCTATTAG 188098 >seq138 Length=141258 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 78270 ATAGTGGAATTTTCTGAAAATATGGCAAATAAAGGAAAAATTGTTATTGTTTCGGCATTA 78329 || || |||||| ||| || ||||||||| |||||| ||||||||||| | || ||| Sbjct 128266 ATTGTTGAATTTAGTGAGAAAATGGCAAATTTAGGAAAGATTGTTATTGTGGCAGCTTTA 128325 Query 78330 GATGCTACATATCAAAGAAAAACATTTGGTAATATTCTAAATTTAATTCCATTATCTGAA 78389 |||| ||| | | | |||||| | ||| ||| || ||||||||||||| || ||||| Sbjct 128326 GATGGTACTTTTGACAGAAAACCTTTTCATAACATATTAAATTTAATTCCTTTGGCTGAA 128385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592299430309840