Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq114 156 3e-33 seq56 149 5e-31 seq128 131 1e-25 seq454 114 1e-20 seq112 113 4e-20 seq13 104 2e-17 >seq114 Length=165420 Score = 156 bits (172), Expect = 3e-33 Identities = 186/250 (74%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 101225 TTAAT-ATACTAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTT 101283 ||||| ||| | ||||| || |||||||| | ||||||||||| || || ||||| || Sbjct 153382 TTAATGATAATTTACATT-CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTT 153324 Query 101284 TTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAA 101343 || ||||| ||||| | | ||||| |||| || |||| ||| |||||||| || | Sbjct 153323 TTAAATATTATAATCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAG 153264 Query 101344 ACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTAC 101403 | | || ||| || ||||| |||||||| |||| |||||| || ||| |||| Sbjct 153263 TCTTTATTAATCAGGTGGAATTCCTTCTTTGTCTTAAATTTTAGCCTTGACAGCATCTAT 153204 Query 101404 AGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATAT 101463 |||||| || | ||| || |||||||||| ||||| || ||||| ||||| ||||| || Sbjct 153203 AGTGTCTGATGGTTCTACATCAAGAGTGATGGTTTTACCAGTTAATGTTTTAACAAAAAT 153144 Query 101464 CTGCATGGTT 101473 | ||| ||| Sbjct 153143 TTACATAGTT 153134 Score = 147 bits (162), Expect = 2e-30 Identities = 184/250 (74%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 101225 TTAATA-TACTAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTT 101283 |||||| || | ||||| || |||||||| | ||||||||||| || || ||||| || Sbjct 163544 TTAATAATAATTTACATT-CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTT 163602 Query 101284 TTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAA 101343 || || || ||||| | | ||||| |||| || |||| ||| |||||||| || | Sbjct 163603 TTAAATGTTATAATCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAG 163662 Query 101344 ACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTAC 101403 | | || ||| || || || ||||| || |||| |||||| || ||| || | Sbjct 163663 TCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAAT 163722 Query 101404 AGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATAT 101463 |||||| || | ||| || |||||||||| ||||| |||||||| ||||| ||||| || Sbjct 163723 AGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTACCGGTTAATGTTTTAACAAAAAT 163782 Query 101464 CTGCATGGTT 101473 ||||| ||| Sbjct 163783 TTGCATAGTT 163792 Score = 141 bits (156), Expect = 7e-29 Identities = 181/247 (73%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 101224 TTTAAT-ATACTAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTT 101282 |||||| ||| | || ||| || |||||||| | ||||||||||| || || ||||| | Sbjct 139752 TTTAATTATAATTGAAATT-CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCT 139694 Query 101283 TTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCA 101342 ||| ||||| ||||| | | ||||| |||| || |||| ||| |||||||| || | Sbjct 139693 TTTAAATATTATAATCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGA 139634 Query 101343 AACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTA 101402 | | || ||| || || || ||||| ||||||| |||||| || ||| || | Sbjct 139633 GTCTTTATTAATCAGGTGGGATTCCTTCCTTATCTTAAATTTTAGCCTTGACAGCGTCAA 139574 Query 101403 CAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATA 101462 ||||| || | ||| || |||||||||| || || || ||||| ||||| ||||| | Sbjct 139573 TGGTGTCTGATGGTTCAACATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTAACAAAAA 139514 Query 101463 TCTGCAT 101469 | ||||| Sbjct 139513 TTTGCAT 139507 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| |||||||| | ||||||||||| || || ||||| |||| || || ||||| | Sbjct 144113 TTCCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATGTTATAATCTG 144054 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| || |||| ||| |||||||| || | | | || ||| | | Sbjct 144053 AAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAAGTG 143994 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || |||| ||||||| | ||| ||| | |||||| || | ||| | Sbjct 143993 GGATTCCTTCCTTGTCTTAAATTTTTGCCTCGACAGCTTCAATAGTGTCTGATGGTTCAA 143934 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||||| ||||| || ||||| ||||| ||||| || | ||| Sbjct 143933 CATCAAGAGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTTCAT 143885 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| |||||||| | ||||||||||| || || ||||| |||| || || ||||| | Sbjct 164281 TTCCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATGTTATAATCTG 164340 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| || |||| || |||||||| || | | | || ||| || | Sbjct 164341 AAAGTGTTCTTCCATCTTCTAATTATTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 164400 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || |||| |||||| || ||| || | |||||| || | ||| | Sbjct 164401 GGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAA 164460 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||||| || || || ||||| |||||||||||||| | ||| Sbjct 164461 CATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 164509 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || | || ||||| || || || ||||| |||| || || ||||| | Sbjct 165080 CCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAA 165139 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || |||| || |||||||| || | | | || ||| || || Sbjct 165140 AGTGTTCTTCCATCTTCTAATTATTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 165199 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || |||| |||||| || ||| || | |||||| || | ||| || Sbjct 165200 ATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACA 165259 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || || ||||| |||||||||||||| | ||| Sbjct 165260 TCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 165306 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 |||| ||| ||||| | ||| ||| ||||| || || | ||| || || ||| Sbjct 144780 AAAAATAAGTGAAGCATTCGTTCACTTTAAATATTATAGTCTGAGATTGTCCTATCATGT 144721 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 | ||||| | |||||||| || | | | || ||| || || || ||||| || ||| Sbjct 144720 TATAATTGTTATCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCT 144661 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 | |||||| || ||| | || | |||||| | | ||| || |||||||| ||| Sbjct 144660 TAAATTTTAACCTTGACAGTGTCAATAGTGTCTAATGGTTCAACACAAAGAGTGATGGTT 144601 Query 101438 TTGCCGGTTAAAGTTTTTACAAATAT 101463 || || ||||| |||||||||||||| Sbjct 144600 TTTCCAGTTAATGTTTTTACAAATAT 144575 >seq56 Length=265680 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||||||| | || ||||||||||| || |||||||||| || || ||||| | Sbjct 113496 CCTCCTCTTAATCTCAATACTAAATGAAGAGTTGATTCTTTTTAAATGTTATAATCTGAA 113437 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | |||||| |||||||| ||||| | | |||||| || ||| Sbjct 113436 AGAGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGAGGA 113377 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||||| ||| || || ||| || | ||||| || | ||| || Sbjct 113376 ATTCCTTCTTTATCTTAAATCTTAGCCTTAACAGCATCAATGGTGTCTGAAGGTTCTACA 113317 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || || || || || ||||| ||||| || | ||| Sbjct 113316 TCAAGTGTGATAGTCTTTCCCGTCAAGGTTTTAACAAAAATTTACAT 113270 >seq128 Length=150569 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||| | ||| |||||||| || || |||||||||| ||||| ||||| | Sbjct 58062 CCACCTCTTAGTCTTAATACTAAATGGAGAGTTGATTCTTTTTAAATATTATAATCTGAA 58003 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | |||||| |||||||| ||||| | | || ||| || ||| Sbjct 58002 AGAGTTCTTCCATCTTCGAGTTGCTTTCCTGCAAAAATCAATCTTTATTAATCAGGTGGA 57943 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||||| ||| || || ||| || | || || || | || || Sbjct 57942 ATTCCTTCTTTATCTTAAATCTTAGCCTTAACAGCATCAATTGTATCTGAAGGCTCTACA 57883 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || || || | ||||| ||||| || | ||| Sbjct 57882 TCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTAACAAAAATTTACAT 57836 >seq454 Length=44262 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||||||| | |||||||| ||||| || ||||| |||| || || || || | Sbjct 41492 TTCCTCCTCTTAATCTCAAAACTAAGTGAAGTGTTGATTCCTTTTAAATGTTATAGTCTG 41551 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| | || || |||| || |||||||| || | | |||| |||||| | Sbjct 41552 AAAGTGTTCTTCCGTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTGTTAATCGGGTG 41611 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || |||| ||||| ||| ||| || | |||||||| | ||| | Sbjct 41612 GGATTCCTTCCTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCAGATGGTTCAA 41671 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 | |||||||| | || || || || | || ||||| || || | ||| ||| Sbjct 41672 CATCAAGAGTAATTGTCTTTCCTGTGAGTGTCTTTACGAAAATTTACATTGTT 41724 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||||||| | |||||||| ||||| || ||||| |||| || || || || | Sbjct 41038 CCTCCTCTTAATCTCAAAACTAAGTGAAGTGTTGATTCCTTTTAAATGTTATAGTCTGAA 41097 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || || |||| || |||||||| || | | | || |||||| || Sbjct 41098 AGTGTTCTTCCGTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTATTAATCGGGTGGG 41157 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || |||| ||||| ||| ||| || | |||||||| | ||| || Sbjct 41158 ATTCCTTCCTTGTCTTAGATTTTGGCTTTGACAGCATCAATTGTGTCAGATGGTTCAACA 41217 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | || || || || | || || ||||| || | ||| Sbjct 41218 TCAAGAGTAATTGTCTTTCCTGTGAGTGTCTTGACAAAGATTTACAT 41264 >seq112 Length=167324 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | || |||||||| || || |||||||||| ||||| ||||| | Sbjct 45498 CCTCCTCTGAGTCTCAATACTAAATGGAGAGTTGATTCTTTTTAGATATTATAATCTGAA 45439 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| ||||||||||| || ||||| || || | | || |||||| || Sbjct 45438 AGAGTTCTTCCATCCTCCAATTGCTTTCCAGCAAAAATTAATCTTTATTAATCGGGAGGG 45379 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || | || ||| || ||| || | ||| ||||| | || || Sbjct 45378 ATTCCTTCCTTGTCCTAGATCTTTGCCTTAACAGCATCGATAGTATCAGATGGCTCAACA 45319 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || || || || | || || ||||| || | ||| Sbjct 45318 TCAAGTGTGATGGTCTTACCCGTAAGGGTCTTAACAAAAATTTACAT 45272 >seq13 Length=521119 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | || ||||||||||| || |||||||||| || || ||||| | Sbjct 46020 CCTCCTCTGAGTCTCAATACTAAATGAAGTGTTGATTCTTTTTAAATGTTATAATCAGAA 46079 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || |||| ||| || ||||| || || | | || ||| || || Sbjct 46080 AGAGTTCTTCCATCCTCTAATTACTTTCCAGCAAAAATTAATCTTTATTAATCAGGAGGG 46139 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| |||| || ||| || ||| || | || || || | || || Sbjct 46140 ATTCCTTCTTTGTCTTAGATCTTTGCCTTAACAGCATCGATGGTATCCGATGGCTCAACA 46199 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || ||||| || | || || ||||| || | ||| Sbjct 46200 TCAAGTGTGATGGTCTTGCCTGTGAGGGTCTTAACAAAAATTTACAT 46246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396267069657522