Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq2232 127 4e-24 seq861 95.1 2e-14 >seq2232 Length=1021 Score = 127 bits (140), Expect = 4e-24 Identities = 293/427 (69%), Gaps = 22/427 (5%) Strand=Plus/Plus Query 168273 CCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGGGCC 168332 || || ||||||| |||||||| | |||| || | ||| | || || ||| || Sbjct 510 CCTTTAACGCACATGACCTGCTTCAAGGTGTGAACAACCTCAATCAGATCGGACTGAGCA 569 Query 168333 GCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCGTCC 168392 | |||||| | || || ||||||||| ||| | ||||| | ||| | |||||| Sbjct 570 GTCATGACCTGATCAATGTCCTTGTAAGCGCCCGGAATTTCGTCCAGCACCGCATCGTCC 629 Query 168393 TTGCGGCACTCGACGCCCTTCGTGGCTTCG--ACGTGCTCGTCCAGGGAG-ACGAGCTTC 168449 |||||||| ||||| ||||| | | || || || |||| |||| | || || | Sbjct 630 TTGCGGCATTCGAC-CCCTT-GGGTCTGCGCCACCAACTCGGTCAGGCTGAACTTGCGGC 687 Query 168450 TTCGCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCACGAGCAGAAGGCGTCA 168509 | || || | || |||||| |||||||||| || |||||||| |||| || ||| Sbjct 688 GT-GCTGCTGTGCGTGACATGGCGCGGCCGGCCCCATGGCTGCAACTGCAGTAGCTGTCC 746 Query 168510 GCGTGGCCCTTGCCGCGCACGATGAACGACTTGGCG----CCCATCGAACCCGGAATGAT 168565 || ||| ||||||||||||||| | || ||| ||||| || || ||||| Sbjct 747 TGGTTGCCTTTGCCGCGCACGATGTAGGA----GCGCTGACCCATGCTGCCAGGGATGAT 802 Query 168566 GCCGAGTTCGTCCTTCTGCG---CCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTC 168622 ||| || ||| || || ||| |||| | ||||||||||||||||| ||| || Sbjct 803 GCCAAGGTCG-CCATC-GCGGGCCCGA-ATAGCGCCCTTGCGGGTCACCCAGAGGTTGCG 859 Query 168623 GCCGAAGTGGCGTTC-CTTGTTGACGTAGTTGTGGTGACAGTTCACCGCTTCCTTGTCGG 168681 ||| || ||| || | || || ||||||||||| ||||| | ||||||| | | Sbjct 860 GCCAAAATGGTTCTCGCGTG-CCACATAGTTGTGGTGGCAGTTGATGGCTTCCTGGGTGA 918 Query 168682 TCTTGAA 168688 || |||| Sbjct 919 TCGTGAA 925 >seq861 Length=7582 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 71152 GGCCGCCGGCGAGTTCGAGATCGTGCCCTTCGAGTTCATGCGCGGGCGCACCTTCGACAA 71211 |||| ||||||| ||||| | | |||| ||| |||||||||||||||||| | | | | Sbjct 5118 GGCCAACGGCGAGATCGAGGTGGCGCCCATCGCGTTCATGCGCGGGCGCACGCTGGCCGA 5177 Query 71212 CGCCTTCGTGATCCTCGACGAGGCTCAGAACGCGTCGTTCGACGACCTGGAACTGTTCGT 71271 |||||||| ||||| |||||||| |||||| | || | | || | ||||| | Sbjct 5178 TGCCTTCGTCATCCTTGACGAGGCGCAGAACACCACGGCAGCGCAGATGAAGATGTTCCT 5237 Query 71272 GACCCGTACCGGTCAGGGTTCGCAAG-TCGTGATCTGCGGCGATCCCGGCCAGATCGAC 71329 ||||||| ||| || | || | | |||||||||||||| ||| ||| ||||| Sbjct 5238 GACCCGTTTCGG-CATGAACAGCCGGATGGTGATCTGCGGCGACCCCAAACAGGTCGAC 5295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895740131650320