Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq1286 102 1e-16 seq1005 91.5 2e-13 seq711 91.5 2e-13 >seq1286 Length=2417 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 826 TGTAGCTCAGTTGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 768 Query 169792 GTCAGTCCTGCCA 169804 |||| || |||| Sbjct 767 GTCACTCGCGCCA 755 Score = 102 bits (112), Expect = 1e-16 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 937 TGTAGCTCAGTTGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 879 Query 169792 GTCAGTCCTGCCATTT 169807 |||| || |||| || Sbjct 878 GTCACTCGCGCCACTT 863 >seq1005 Length=4377 Score = 91.5 bits (100), Expect = 2e-13 Identities = 58/62 (94%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 1691 GTAGTTCAGTTGGT-TAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCG 1633 Query 169793 TC 169794 || Sbjct 1632 TC 1631 Score = 91.5 bits (100), Expect = 2e-13 Identities = 58/62 (94%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 1797 GTAGTTCAGTTGGT-TAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCG 1739 Query 169793 TC 169794 || Sbjct 1738 TC 1737 >seq711 Length=17244 Score = 91.5 bits (100), Expect = 2e-13 Identities = 171/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 122399 GACAACGGGCACGAAAAAGCAGACCGTACGGGCACGGGCACCCTGTCGT-TATTCGGCGC 122457 ||| |||| ||| ||| ||||| | || || ||||| ||| | || | || || Sbjct 9586 GACCACGGAACCGATAAAACAGACAGAACAGGAACGGGAACCA-GAAGTGTTTTTGGTTA 9644 Query 122458 ACAAATGCGCTTTGACCTGCAAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCT 122517 ||| |||| | ||| || || ||||| || |||| ||||||||||| || || | Sbjct 9645 CCAATTGCGATATGATTTGTCTAAGGGTTTTCCTTTGGTAACGACCAAAAAAGTGCATTT 9704 Query 122518 CCGCTCCATCATCCATGAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCT 122577 || || || |||| | || ||||| || | |||||||| |||||| | ||||| Sbjct 9705 AAAGTCTATTATTTATGAATTGCTTTGGTTTCTAAAAGGCGATACAAACATCAAATATCT 9764 Query 122578 GAAAGACAACAACGTCAGTATCTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCC 122637 | ||| || || || ||| ||||||||||||| ||| |||| ||||| || || Sbjct 9765 TACAGATAATGGTGTTTCCATTTGGAATGAATGGGCAGACGAAAATGGAAATCTTGGTCC 9824 Query 122638 GGTGTACGG 122646 || ||||| Sbjct 9825 AGTTTACGG 9833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777609195941600