Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq1532 132 9e-27 seq1730 123 5e-24 seq1104 96.9 7e-16 >seq1532 Length=1741 Score = 132 bits (146), Expect = 9e-27 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 8437 CGTAGTCTTCCACCACGTAGTCCTCGTTGATGGACTCGTAGTTTTCGATGCGGTCGCGCT 8496 |||| || || | ||| ||| ||||||||| | ||| ||||| |||| |||| | | Sbjct 573 CGTATTCCTCGATCACATAGGCCTCGTTGACGCTCTCATAGTTGGCGATCCGGTTGTATT 632 Query 8497 TCGGCACCTCGTCGATCAGGCGGCGGTGCGTGCCTTCCTGCCAGTAAATTGACAGGTTAT 8556 |||| | || | || | |||||||| | |||||||||||| || || || ||||||| Sbjct 633 CCGGCTCATCCTTGAGCTGGCGGCGGCGGGTGCCTTCCTGCACATAGATCGAGAGGTTAT 692 Query 8557 CGAGGCGCGTAATCATCAGGGCATTGGCCGGGAAATACGGCACGCGCACGGCAGGCAGGT 8616 | || ||||| ||||| | || ||||||||||| | || ||||||||||| |||||| Sbjct 693 CCAGCCGCGTGATCATGATCGCGTTGGCCGGGAAGAAGGGGACGCGCACGGCGGGCAGGC 752 Query 8617 TGCCGATGCGTTT 8629 |||||| |||| Sbjct 753 CGCCGATCTGTTT 765 >seq1730 Length=1430 Score = 123 bits (136), Expect = 5e-24 Identities = 415/639 (65%), Gaps = 14/639 (2%) Strand=Plus/Plus Query 8680 GGTTCACGATGGGGAAATACTTGTCGGCCAGCAGCTGACGGCCGCAGATCACAACCAGCT 8739 |||| | || |||||||||||||| || ||||| ||||| |||||| || || | Sbjct 406 GGTTGATGAGCGGGAAATACTTGTCATGCACCAGCTTGCGGCCCACGATCACGACAAGGT 465 Query 8740 CCGGGTCTTCCTGATACCA--CGGCTCAATCAGGGTGTTGGTGGCGTCCATCACCAGTGC 8797 | || |||||||| ||| ||| || || | | |||||||| |||||| | Sbjct 466 CGGGATCTTCCTGCACCCATTCGGGC--ATGAGCGATTCCTTGGCGTCCCACACCAGAGA 523 Query 8798 GTCAAGGTTCACATAGGTGCGCCCTTTGCCGACCAGCACCTTGTCTTCCACCGTGCCGTT 8857 ||| || | ||||| || | | ||| |||||| | |||| ||||| Sbjct 524 GTCGAGACTGTCATAGTCGCCCGCCGCGCCATAGGTGACCTTGCCCGTCACCTTGCCGCC 583 Query 8858 CTCAAGGGTGACGTTGCTCATCACGCGCTTGGGTGCGTTGTCGCGATACTTCTGCAACCA 8917 ||| ||| | ||| | || | ||| || | |||||| | ||| | ||| Sbjct 584 CTC------GACCTCATCCATGAGCCGTTCGGGGGCTTCGTCGCGGATCGCCTGAAGCCA 637 Query 8918 GCCCACGGCC-ACGTCCTGCAACATGGGGTTAACGGCGCGATTGGAGGTTTTGGCGCGGT 8976 ||| ||| | ||||| | || || || ||| ||| |||| ||| ||||| || Sbjct 638 GCC-ACGATTGAAATCCTGAAGCAGCGGATTGGCGGTGCGGTTGGTGGTCTTGGCATAGT 696 Query 8977 GGGTACCGTTAAAGCCGATCATGATGCGGTCGAGTGACTGGCGCTTTACGATGGCATCAC 9036 |||| || || ||||| | ||| ||| || | ||| || | | | |||||||| Sbjct 697 GGGTGCCATTGAAGCCCACGCAAATGGTGTCCAGCGCCTGACGGATCAGGCAGGCATCAC 756 Query 9037 GCAGGCGGGCCTGAAAATCTTCATAGCGGGCCCACAAATCCAGCGTGTTATAGCGAATAT 9096 | | ||| | ||| || || | | ||||||| |||||| || ||||| | | Sbjct 757 GGATGCGCGTCTGGAAGTCGGGGAACTGCGCCCACATGTCCAGCTTGGCGTAGCGCAGAA 816 Query 9097 GAAAGTCGTAGTTCACCTGCGCGCACTCATACATGT-CGCTGTCCAGCGCGGCAAAGTCG 9155 |||| |||| ||| ||| || || | ||| |||||| ||| |||| Sbjct 817 CGGTGTCGAAGTTGTTCTGGTTGCATTCGTAACCGAACGCA-TCCAGCCCGGTGGGGTCG 875 Query 9156 GCGGTTTCGCGCTCGTCGCCGCCTGCGGTGTCGGTGGTGCTGGCAATCGAGCCGGTCACG 9215 | | |||| || ||||||| |||||||||||| ||||| | || || ||| |||| Sbjct 876 GTGCCGACGCGTTCATCGCCGCTGGCGGTGTCGGTGTTGCTGCCGATGGAACCGCCCACG 935 Query 9216 CCGATGCCGATTTTCTCGCCCTTCATTTCAGCAACCGGCACGATGTTGATACGGGTCAGA 9275 | ||||||||||| |||||||| || | |||||| || |||||||| ||| | || Sbjct 936 GTCAGGCCGATTTTCTGGCCCTTCAGTTGCGGAACCGGGACAATGTTGATGCGGCTGAGG 995 Query 9276 AAGTCCGAGGACTCCTGTACGCGGTTCATCAGGGTCTGC 9314 ||| | || ||||| | ||| | | ||| |||||| Sbjct 996 AAGGCGATGGCTTCCTGCATGCGCGTTACCAGCGTCTGC 1034 >seq1104 Length=3343 Score = 96.9 bits (106), Expect = 7e-16 Identities = 321/490 (66%), Gaps = 37/490 (8%) Strand=Plus/Minus Query 26172 TTGCCCCAGAAGCGGAAGCCATCTTTACGGATCAGGGTGGTAACGCATGCCTCGTTGAGC 26231 |||||||| || || |||| | | || |||||| ||||| | | |||| |||| ||| Sbjct 2232 TTGCCCCAAAACCGATAGCCGTTGTAACAGATCAGCGTGGTGATGTTTGCCGCGTTCAGC 2173 Query 26232 AGGTCGGCGTCGGTGCCGGTCTGCTGCAAATCCCAGAAGACCGAGGCGGAAATGCCGGTC 26291 ||| | ||||||||| | | | || ||||| | || || |||||||| Sbjct 2172 AGGGCCGCGTCGGTGGTGTCATCATCCATCGCCCAGGACACGTCCTTGGCCATGCCGGTA 2113 Query 26292 ACACCGTTAACGCCAACGTTGGACAGGGTTTTGTGCCAGCCGGTG-TCGGTGTCGATTTT 26350 || ||| ||| | || ||||| | |||||||||||||| | || | |||||| | Sbjct 2112 ACGCCGGTAATCACCACATTGGAAATCGTTTTGTGCCAGCCCACGGTCTG-GTCGATATA 2054 Query 26351 TGCCCGCAGGCCCAGCGCTCGGGCGGTGGCGTACGCGGTTTCGGACTG--ATTGGCGGTG 26408 || |||||||||||||| | | | | |||| ||| || ||| ||||| ||| Sbjct 2053 GGCGCGCAGGCCCAGCGCGCAGCCAAT--CGTA-TCGG---CG--CTGCCCTTGGCTGTG 2002 Query 26409 GTGTTCCAGCTGATAAAGTCCGGCCAGATAACCATTAATTCGCGCTGGCTGAAGTTCTCG 26468 | | |||||||| | ||| ||||||||| | ||| | ||| Sbjct 2001 G------------------CGGGCCAGATCAGCATCAATTCGCGCGCCCCGAATTCATCG 1960 Query 26469 CGGTATGCCATCGCCTCGGAAAGGGTTTTGCAGCCCCATGCCGACACATAGGCGAAGGCG 26528 ||||| || || |||||| |||||| |||| ||| ||||||| ||| || Sbjct 1959 CGGTAGGCGATGGCCTCGTCGCGGGTTT---CGCCCTCGGCCATGGCATAGGCAAAGCCG 1903 Query 26529 CGCAGCTGC-TGAGCAATGCTGGCAAGCGCGGTCGAGACTTCCAGCGCGTCGAGACCCGG 26587 ||||| || || || || || || || | | || ||| ||| || || ||||| Sbjct 1902 CGCAGGCGCTTGGCCACCGCGATCAGGC-CGTTGGTTACGTCCTGCGTATCCAGCCCCGG 1844 Query 26588 CACGCCGAGAATGCGC-GGTTTGACGCCGAGCTGCGTCTGCGCGCTCAGCAGCGCCTTCA 26646 | |||| ||||||||| || || ||| || | || || ||| |||||||| || Sbjct 1843 CGCGCCAAGAATGCGCGGGCGCGATCCCG-TCTTGGCCTCGGCCATCAACAGCGCCTGCA 1785 Query 26647 TGCCGGTGTA 26656 ||||||| || Sbjct 1784 TGCCGGTATA 1775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94480567816152