Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq114 118 9e-22 seq56 104 2e-17 seq454 98.7 8e-16 seq507 95.1 1e-14 >seq114 Length=165420 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||||||||| ||||||||||| || || ||||| ||| Sbjct 163788 ATGCAAATTTTTGTTAAAACATTAACCGGTAAAACCATCACTCTTGATGTTGAACCATCA 163729 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||||| ||||| ||||| || ||| | || ||| || Sbjct 163728 GACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 163669 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 | ||||| || ||||| || || |||| |||||| | ||| | | ||||||||| Sbjct 163668 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGATTATAAC 163609 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| |||| ||||| ||||| || | || || |||||| |||| || || Sbjct 163608 ATTTAAAAGGAATCAACTCTCCATTTAGTTTTGAGATTAAGAGGTGGAAT 163559 Score = 118 bits (130), Expect = 9e-22 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 28549 TAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAAC 28608 || ||||| |||||||||||||||||||||| || || || || || || |||| Sbjct 164514 TAGAAATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATCACTCTTGATGTTGAAC 164455 Query 28609 CTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 | ||||| || | | || | ||||| ||||| ||||| || ||| | || | Sbjct 164454 CATCAGACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTG 164395 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 || || | ||||| || ||||| || ||| |||| |||||| | ||| | | |||| Sbjct 164394 ATTAATAAAGACTCATTTTTGCAGGAAAATAATTAGAAGATGGAAGAACACTTTCAGATT 164335 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| |||| ||||| ||||| || | || || |||||| |||| || || Sbjct 164334 ATAACATTTAAAAGGAATCAACTCTCCATTTAGTTTTGAGATTAAGAGGTGGAAT 164280 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||| |||||||| ||||| ||||||||||| |||||||| || || || ||||| Sbjct 140961 AAATATGCAAATTTTTGTTAAAACATTAACAGGTAAAACAATCACTCTTGATGTTGAACC 141020 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||||| || | | | | ||||| ||||| ||||| || ||| | || || Sbjct 141021 ATCAGACACTATTGATGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATTCCACCTGA 141080 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 | || | ||||| || ||||| || || |||| |||||| | ||| | | ||||| Sbjct 141081 TTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGATTA 141140 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||| |||| ||||| ||||| ||| | || || |||||| |||| || || Sbjct 141141 TAACATTTAAAAGGAATCAACTCTCCACTTAGTCTTGAGATTAAGAGGTGGAAT 141194 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 28552 AAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTT 28611 ||||| |||| ||||| ||||||||||| ||||||||||| || || ||||| | Sbjct 143883 AAATGAAAATTTTTGTTAAAACATTAACTGGTAAAACCATCACTCTTGATGTTGAACCAT 143942 Query 28612 CAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 |||| || | | | | || || |||||| ||||| || ||| | || | ||| Sbjct 143943 CAGACACTATTGAAGCTGTCGAGGCAAAAATTTAAGACAAGGAAGGAATCCCACTTGATT 144002 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 || | ||||| || ||||| || || |||| |||||| | ||| | | ||||||| Sbjct 144003 AATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGATTATA 144062 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||| ||||| ||||| || | || || |||||| |||| || || Sbjct 144063 ACATTTAAAAGGAATCAACTCTCCATTTAGTTTTGAGATTAAGAGGTGGAAT 144114 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 28549 TAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAAC 28608 || ||||| |||||||||||||||||||||| || || || || || || |||| Sbjct 165311 TAGAAATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATCACTCTTGATGTTGAAC 165252 Query 28609 CTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 | ||||| || | | || | ||||| ||||| ||||| || ||| | || | Sbjct 165251 CATCAGACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTG 165192 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 || || | ||||| || ||||| || ||| |||| |||||| | ||| | | |||| Sbjct 165191 ATTAATAAAGACTCATTTTTGCAGGAAAATAATTAGAAGATGGAAGAACACTTTCAGATT 165132 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||| |||| ||||| ||||| ||| | || || ||||| |||| || Sbjct 165131 ATAACATTTAAAAGGAATCAACTCTCCACTTAGTCTTGAGATTGAGAGGTGG 165080 Score = 109 bits (120), Expect = 5e-19 Identities = 167/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 28549 TAAAA--ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGA 28606 ||||| ||| |||| ||||| ||||||||||| ||||||||||| || || || Sbjct 153131 TAAAACTATGTAAATTTTTGTTAAAACATTAACTGGTAAAACCATCACTCTTGATGTAGA 153190 Query 28607 ACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGT 28666 ||| ||||| || | | | | ||||| ||||| |||||||| ||| | || Sbjct 153191 ACCATCAGACACTATAGATGCTGTCAAGGCTAAAATTTAAGACAAAGAAGGAATTCCACC 153250 Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 ||| || | ||||| || ||||| || || |||| |||||| | ||| | | || Sbjct 153251 TGATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGA 153310 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||| ||| |||| ||||| ||||| || | || || |||||| |||| || || Sbjct 153311 TTATAATATTTAAAAGGAATCAACTCTCCATTTAGTTTTGAGATTAAGAGGTGGAAT 153367 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||| |||||||| ||||| ||||||||||| || || || || || || ||||| Sbjct 139503 AAATATGCAAATTTTTGTTAAAACATTAACTGGAAAGACTATCACTCTTGATGTTGAACC 139562 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||||| || | | || | ||||| ||||| || || || ||| | || || Sbjct 139563 ATCAGACACCATTGACGCTGTCAAGGCTAAAATTTAAGATAAGGAAGGAATCCCACCTGA 139622 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 | || | ||||| || ||||| || || |||| |||||| | ||| | | ||||| Sbjct 139623 TTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGATTA 139682 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| ||| |||| ||||| ||||| || | || || |||||| |||| || || Sbjct 139683 TAATATTTAAAAGGAATCAACTCTCCATTTAGTTTTGAGATTAAGAGGTGGAAT 139736 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||| |||| || | || || || || || |||||||| || || | ||||| || Sbjct 164282 AATGTAAATTTTCGCTAAGACCTTGACTGG-AAAACCATCACTCTTGATGCTGAACCATC 164224 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || | ||||| ||||| ||||| || ||| | || ||| | Sbjct 164223 AGACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTA 164164 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 | | ||||| || ||||| || || |||| |||||| | ||| | | |||||||| Sbjct 164163 ATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGATTATAA 164104 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||| |||| ||||| ||||| ||| | || || ||||| |||| || Sbjct 164103 CATTTAAAAGGAATCAACTCTCCACTTAGTCTTGAGATTGAGAGGTGG 164056 >seq56 Length=265680 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||| |||| ||||| ||||| || ||||| || || || || || ||||||||| Sbjct 113270 ATGTAAATTTTTGTTAAAACCTTGACGGGAAAGACTATCACACTTGATGTAGAACCTTCA 113329 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | ||| || || || ||||| ||| | || |||||| Sbjct 113330 GACACCATTGATGCTGTTAAGGCTAAGATTTAAGATAAAGAAGGAATTCCTCCTGATCAA 113389 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 | ||| | || ||||| || || ||| | |||||| | |||| | | ||||||||| Sbjct 113390 TAAAGATTGATTTTTGCAGGAAAGCAACTTGAAGATGGAAGAACTCTTTCAGATTATAAC 113449 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| |||||||||| ||||| || | ||||| |||||| ||||||| Sbjct 113450 ATTTAAAAAGAATCAACTCTTCATTTAGTATTGAGATTAAGAGGAGG 113496 >seq454 Length=44262 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 || |||| |||| || ||||| ||| | || || || || ||||| || ||||| Sbjct 41724 AACAATGTAAATTTTCGTAAAGACACTCACAGGAAAGACAATTACTCTTGATGTTGAACC 41665 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | | | |||| |||||| ||||| || ||| | || || Sbjct 41664 ATCTGACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAGGAAGGAATCCCACCCGA 41605 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 | |||| |||||||||||||| || ||| |||| ||||| | ||| | | || || Sbjct 41604 TTAACAAAGACTTATCTTTGCAGGAAAATAATTAGAAGACGGAAGAACACTTTCAGACTA 41545 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||| |||| ||||| || || ||| | || || |||||| ||||||| || Sbjct 41544 TAACATTTAAAAGGAATCAACACTTCACTTAGTTTTGAGATTAAGAGGAGGAAT 41491 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||| |||| ||||| || ||| | || || ||||| ||||| || ||||| || Sbjct 41493 AATGTAAATCTTTGTCAAGACACTCACAGGAAAAACTATTACTCTTGATGTTGAACCATC 41434 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | |||| |||||| ||||| || ||| | || ||| | Sbjct 41433 TGACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAGGAAGGAATCCCACCCGATTA 41374 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 | | ||||||||||| || || ||| |||| |||||| || ||| | | |||||||| Sbjct 41373 ATAAAGACTTATCTTCGCTGGAAAATAATTAGAAGATGGTAGAACACTTTCAGATTATAA 41314 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| |||| ||||| || || ||| | || || ||||| ||||||| || Sbjct 41313 CATCTAAAAGGAATCAACACTTCACTTAGTTTTGAGATTGAGAGGAGGAAT 41263 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||| |||| ||||| || ||| | || || || || ||||| || ||||| || Sbjct 41265 AATGTAAATCTTTGTCAAGACACTCACAGGAAAGACAATTACTCTTGATGTTGAACCATC 41206 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | |||| |||||| ||||| || ||| | || ||| | Sbjct 41205 TGACACAATTGATGCTGTCAAAGCCAAAATCTAAGACAAGGAAGGAATCCCACCCGATTA 41146 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 | | |||||||||||||| || ||| |||| ||||| | ||| | | || ||||| Sbjct 41145 ATAAAGACTTATCTTTGCAGGAAAATAATTAGAAGACGGAAGAACACTTTCAGACTATAA 41086 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||| |||| ||||| || || ||| | || || |||||| ||||||| Sbjct 41085 CATTTAAAAGGAATCAACACTTCACTTAGTTTTGAGATTAAGAGGAGG 41038 >seq507 Length=36014 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 28549 TAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAAC 28608 || ||||| |||| || || || || || || || |||||||| || || |||| Sbjct 35483 TAGAAATGTAAATTTTCGTTAAGACCTTGACTGGAAAAACCATCACTCTTGATGTTGAAC 35542 Query 28609 CTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 | ||||| || | | || | ||||| ||||| ||||| || ||| | || | Sbjct 35543 CATCAGACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTG 35602 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 || || | ||||| || ||||| || || |||| |||||| | ||| | | |||| Sbjct 35603 ATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGATT 35662 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||| |||| ||||| ||||| ||| | || || ||||| |||| || Sbjct 35663 ATAACATTTAAAAGGAATCAACTCTCCACTTAGTCTTGAGATTGAGAGGTGG 35714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425392636879134