Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq701 98.7 9e-16 >seq701 Length=18236 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 39254 ATGATTAAAATATCCTTAATGTCAGCCAACATCAATACCGATAAAGGGTAGTAGATCATG 39313 ||||||||||| || ||||| |||||||||| | | ||||| ||||| || ||||| Sbjct 15001 ATGATTAAAATCTCATTAATTCCAGCCAACATTAGTGTTGATAAGGGGTAATAAATCATT 14942 Query 39314 GGTTTGTCATACACAGGGAGCAATTGCTTGCTCACACTGC--GTGTTACCGGATGAAGGC 39371 ||||| ||||| || || | ||||| || || |||||| |||| ||||| | | Sbjct 14941 GGTTTATCATAAACTGGCATTAATTGTTTACT--CACTGCTAAAGTTAATGGATGCAAAC 14884 Query 39372 GGGTTCCACTTCCTCCCGCCAAAATAATACCTTTCAT 39408 | || ||| ||||| || |||||||| |||||||| Sbjct 14883 GTGTACCAGAACCTCCGGCTAAAATAATTCCTTTCAT 14847 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/197 (71%), Gaps = 5/197 (3%) Strand=Plus/Minus Query 38792 CTGCGATTGATATCAGTGATCTCCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCA 38851 |||| ||| || || || || || | ||||||||| | ||||| | | | | |||| Sbjct 15450 CTGC-ATTAATGTCTGTAATTTCTAATTCTCCACGGGGAGAAGGTTTGATATTTTTTGCA 15392 Query 38852 CGTTGAATAACAGAGTTATCATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGA 38911 || | ||||| |||||||||||||| | |||| |||||| ||| |||||||| Sbjct 15391 ATTTCTACTACAGAATTATCATAGAAATATAGCCCTGGAACAGCAAAATTAGATTTAGGG 15332 Query 38912 TTTTCAGGTTTCTCTTCAATAGAAATAGCTTGA--CGATTACTCCCAAATTCAACCACAC 38969 |||| ||||| |||||||| ||||| || | | | || | ||||||| ||||| | Sbjct 15331 TTTTGTGGTTTTTCTTCAATTGAAATTGCATTATTCTGTTCAT--CAAATTCTACCACGC 15274 Query 38970 CGAATCGTTCAGGATCT 38986 | ||| ||| || ||| Sbjct 15273 CATATCTTTCTGGGTCT 15257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472616540113520