Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq379 190 1e-43 seq504 129 3e-25 seq997 122 4e-23 >seq379 Length=55362 Score = 190 bits (210), Expect = 1e-43 Identities = 886/1359 (65%), Gaps = 72/1359 (5%) Strand=Plus/Plus Query 25015 AAATTCTCCAGACAAAACTCTTCTT--ATTGATAAGTTTGAAGTGAATGGTTCAAAACAT 25072 ||||||||||| ||||||||||||| || |||| || | || |||||||||| || Sbjct 4030 AAATTCTCCAGCCAAAACTCTTCTTGTATAGATA--TTAGTTGTATATGGTTCAAATGAT 4087 Query 25073 TCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAA 25132 ||||||||| | |||| | || |||||||||||||| ||| ||||||| ||| Sbjct 4088 TCATTATTTTAAAGAATTTAACTTGTTGATGCTGTTGGCATAGGTGCAATTAATAAAGAA 4147 Query 25133 TTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTAAATTATTATCT 25192 ||||||| |||||||| | || | | ||| | ||| |||||| | || ||| | Sbjct 4148 TTTCTCATTCCATATTTTATTATATTCTATTTGAGAGTATTCCAATC-ATATAATTTTGG 4206 Query 25193 AACTCGATATCGTTATCATATAAATCAAATTGTAACAATCCACTTGCTGCAGG-CGATTG 25251 | | | | | || ||| ||||||| || | ||| || ||| || | | Sbjct 4207 AGTT--ACACCC----CACATA--TCAAATTACAAAATTCCTTATGATGCTGGACTACCT 4258 Query 25252 ATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTTTTGATTGCTCTAAC--GCA 25309 | ||||||| ||| || | | ||| | || ||| || |||| || Sbjct 4259 GT-AAAAGTTTCATAAGGTCCAAATTTCTATGCTAATTCAAAAGAT--CTTTAACATGCC 4315 Query 25310 GCATAATACATATTTTCAAAAATCGCTTTGT-TTAAAAACTTAG-CTTTTTCTCCATCGA 25367 ||||||| ||| ||||||||||| || | || || || || | | |||| ||| | Sbjct 4316 CCATAATAGATAGTTTCAAAAATC--TTAGCATTCAATTCTAAGGCATCTTCTGAATCAA 4373 Query 25368 AAGCAATTTCCATTAAGGCGAACGTATCTGCTAATCCCTGAACTCCTAATCCAACTGGAC 25427 | | |||| |||| || | |||||| || || | ||||||| ||||| || | Sbjct 4374 ATGGTATTTTCATTCTTTATAATGCATCTGCAAAACCTTAGACTCCTATTCCAATAGGTC 4433 Query 25428 GATGTTTATTATTACT-TATCTCAGTTTCTGATGTTGGATAGAAATTTGTATCGATCACA 25486 |||| | |||||||| ||| || | || | |||||| || || ||| || || Sbjct 4434 TATGTCTTTTATTACTGTAT-TCTGCTTATTTAACTGGATAAAAGTTCAAATCAATTACT 4492 Query 25487 TTATCTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCAACTCAATAAAGTCAAAATAA 25546 ||| ||||| | || | || || | | || |||| ||| || ||||||| | Sbjct 4493 ATATTAAGATTTGTCGTGATTAATTTAGT--AATCTC-CAAC--AATTAA-TCAAAATCA 4546 Query 25547 GGCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGCGATTGATGCTAAATTACAA 25606 | |||| ||||| ||| | || || ||||| || || | ||||||| Sbjct 4547 -----AAAGTTT-TATCTTCTTTGATTAACTTTTATAAATTAATACTAGCAAGATTACAA 4600 Query 25607 ACAGCTTGTTCTTTCCCGTCA-GAATATTCATTGATCTCGATACATAAGTTGCTAGATTT 25665 ||||| ||| | | || | | | ||| | || || |||||| || ||| ||| Sbjct 4601 ACAGCAATTTCAT-CTGGTGATGTAAATTAGATAATTTCAGTACATAGATTACTACTTTT 4659 Query 25666 GATTACTCCATAATTCTTTTGATTATTGCATGTATTGACAATATCTTTATATCCTAAATA 25725 ||| || ||||||||||||| | |||| | |||||||||| | ||| Sbjct 4660 TATTGTACCTAGATTCTTTTGATTACTTTTCTAATTGCAAGCATCTTTATATAACATATA 4719 Query 25726 TGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCCCAAAGTTCTCTCGCTTTTAC 25785 ||| ||| ||| ||||||| | | ||||| | ||| | || ||| || || | Sbjct 4720 TGGTAATCCAGTTGATATTTGAGCATCAATAATTTCTTACCATAATTGTCTAGCCTTCAT 4779 Query 25786 TTT--CTTTACGAAGTTACCATCAGAAACAGCTCTTTCGTAAAGTTCAACAAATTCTTGA 25843 | | || ||| | || | || || | || || || |||| || |||| Sbjct 4780 TGTAACTCTACCCA--TATTTTTTGATTCATAT---TC--AATGT---ACAATTTGTTGA 4829 Query 25844 TTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTGAGAATAATATTTGGACAGAATAAA 25903 || || | || | || || | | | || | | || ||||||| | ||| Sbjct 4830 ATTCTTAAC-CATAACAATCTT----AAAGACCTGGACATTCAT--TTGGACACATCAAA 4882 Query 25904 TGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAA 25963 |||||| | || | | ||| | | ||||||||||||||| ||||| | | || Sbjct 4883 GTCCAATCTGAATCATCTTTTACTCTTTACATAAATAAATCTGGTATCCATAAACCTAAA 4942 Query 25964 AATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCA 26023 ||||||||||| |||||| |||||| |||| ||||||||| | | | ||||||| Sbjct 4943 AATAAATCTCTTGCTCTCTATTCTTCAATTCCATGATTCTTTCTCAATTATAAGAAACTT 5002 Query 26024 AAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCA 26083 | |||||| ||||||||||||| ||| |||||||| ||||||||||| || || Sbjct 5003 ATAATATCACTATGCCATGGTTCTATATAAATAGCAAATGATCCTTTTCTTTTACCACCT 5062 Query 26084 CCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTT 26143 |||| |||||| |||||||| || ||||| || || |||||||| || ||||| ||| | Sbjct 5063 CCTTAATCTACATATCTTGCTGTATCATTAAACACCTTCAACATAGGCACTAAACCATTG 5122 Query 26144 GAAAATCCGTTTGTGCTATGAATCT-TGGATCCTGTCGATCTAATATCGTGA-GCA-TGA 26200 | ||| ||||| | ||| | ||| | | ||||| || | ||| || | | Sbjct 5123 CTTATTCCATTTGTTCCTCTAATATAACTATCTTAT-GATCTGATCT-TTGATACACTTA 5180 Query 26201 ATACCGATTCCACCAGCCCATTT--TGAAATAGCTGCACA-ATC-TGAAACTGTATCGAA 26256 || || ||||| ||||| | || || | ||| ||||| || ||| | || || | Sbjct 5181 AT-CCTATTCCTCCAGCTGACTTACTG-ATTAG-AGCACATCTCTTGAGA--GTCTCATA 5235 Query 26257 AATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATG 26316 || |||| ||| |||| | ||| | |||| |||||| || || | || | || Sbjct 5236 TATACCTTCTATTGAATCATCAACCATATCCAATAGAAAACATGATGACATTTAAGGATA 5295 Query 26317 AGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGT 26355 || ||| || ||||||||||| ||||| |||||||| Sbjct 5296 AGGTGTGCCACTGTTAAATAATGTTGGTGTGGCATGAGT 5334 >seq504 Length=36300 Score = 129 bits (142), Expect = 3e-25 Identities = 184/256 (72%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATG-CCAATCAGCATTTTGCTCAACTTT--CTCCATAAATAAATC 25944 ||||||||| | | |||| |||||| | || || |||| ||| || || |||| Sbjct 31949 ATTTGGACACA-TCAATGTCCAATCTGAAT------CATCTTTTACTCTTTACATTAATC 31897 Query 25945 TGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTT 26004 ||| ||||| | | ||||||||||||| |||||| ||||| || |||||||| Sbjct 31896 TGGTATCCATAAACCTAAAAATAAATCTCTTGCTCTCTATTCTTAAATTTAATGATTCTT 31837 Query 26005 TTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACT 26064 | | | | ||||||| | |||||| ||||||||||| | ||| |||||||| Sbjct 31836 TCTCAATTATAAGAAACTTATAATATCACTATGCCATGGTTCAATATAAATAGCAAATGA 31777 Query 26065 ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAA 26124 ||||||||||| || || |||| |||||| |||||||| || |||| || || || || Sbjct 31776 TCCTTTTCTTTTGCCACCTCCTTAATCTACATATCTTGCTGTACCATTAAACACCTTTAA 31717 Query 26125 CATTGGAACTAATCCA 26140 ||| | | ||| ||| Sbjct 31716 CATAGACAATAAACCA 31701 >seq997 Length=4420 Score = 122 bits (134), Expect = 4e-23 Identities = 256/375 (68%), Gaps = 20/375 (5%) Strand=Plus/Minus Query 35887 CCTTTTCCATAAATGATATC---TTCTGTTACTACTTTAAATGGTGGACCAACTTTATTT 35943 |||| |||||| || ||||| |||||| | | ||| ||||||||| ||||||| ||| Sbjct 4203 CCTTCTCCATACATAATATCGAATTCTGT-ATT--TTTGAATGGTGGAGCAACTTTGTTT 4147 Query 35944 TTGACAATTTTGATTTGTTGCTTGAATCCAATAACATCTTCACCTTCTTTAATAACT--- 36000 || |||||||| | || | ||| | | ||||||| ||| |||| || | Sbjct 4146 TTCACAATTTTCACTTTCACACGGTTTCCTACAGCATCTTCGCCTACTTTTATTGGTGAG 4087 Query 36001 CCTTTATTTTTGATTTCAAGTCTTTGTGTTGCATAGAATTTCAACGCTTTTCCTCCTGTA 36060 || | || |||| |||| |||| | |||||||||||||| || ||||| || || Sbjct 4086 CCACTTCTTCTGATGTCAATTCTTACCGAAGCATAGAATTTCAAAGCATTTCCACCAGTT 4027 Query 36061 GTTGTTTCAGTTGGACCATACATT---GCGATTGTCTTTCTTAATTGATTTATGAAAATT 36117 || ||||||| || ||||| ||||| | | ||||||||| || ||||||||| Sbjct 4026 GTAGTTTCAGGATTTCCGAACATTACCCCGATTTTTTCTCTTAATTGGTTGATGAAAATT 3967 Query 36118 ATTGTGCATCCTACTTC----ACTTGCGGGACCAGTTATTAATTTCATTCCTTGACTCAT 36173 | || ||| | ||| | | | | | |||| | | ||| ||||| ||| Sbjct 3966 ACCGTACAT-TTTGTTCTAGAAATCGTTG---CTGTTAATTTTCTCAAAGCTTGAGACAT 3911 Query 36174 CATTCTTGCTTGTAAAGCAATTTTAGCTTCTCCACTTTCACCTTCTAACTCAGCTTTTGG 36233 | |||||| || || | ||||||| ||||| |||| ||||| | || |||||||| Sbjct 3910 TAATCTTGCATGCAATCCCATTTTAGAATCTCCCATTTCTCCTTCAATTTCTGCTTTTGG 3851 Query 36234 AACCATAGCTGCAAC 36248 || ||||||||| Sbjct 3850 TGTCAAAGCTGCAAC 3836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253032765111950