Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq22 152 6e-32 seq1007 129 7e-25 seq53 100 3e-16 >seq22 Length=406851 Score = 152 bits (168), Expect = 6e-32 Identities = 487/741 (66%), Gaps = 22/741 (3%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||| |||||||||||| |||||||| || |||||||||||||| ||||||| ||||| Sbjct 175578 ACAGCAATAGGACCTAATCCAGGACCACCTCCTCCATGTGGAATGGAGAATGTTTTATGA 175637 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGA-CCTACCTGTGC 138301 | ||| | |||||| ||||| || || | | | || || || | || |||| ||| Sbjct 175638 AGATTCAAATGACAAACATCAGCTCCTAAATATCCAGGAGATG-TATATCCAACCTATGC 175696 Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATAT 138361 ||| | ||| || ||||| | |||||| || |||| ||||||| | | | || Sbjct 175697 ATTCATATTAGCTCCATCCATATATACTAATCCTCCATGATCATGAATTAGTTGAATAAT 175756 Query 138362 CTGTCTGATGTTT--GTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACAT 138419 || ||| ||||| |||| | | |||| || |||||||| |||||||| |||||| Sbjct 175757 CT-TCT-TTGTTTAATCTTCATAGATTCCATATGTTGATGGATAAGTAATCATCATACAT 175814 Query 138420 G----AGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTT 138475 | ||| || || | | |||| |||||| | | ||| || | || | | Sbjct 175815 GCTAAAGACTTTTCAT-TTTCTTTGAT---TTTCTTATTCAAATCATTCAAATCAACATA 175870 Query 138476 GCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGG 138535 ||||| |||||| || || |||||| || | ||| || | || || |||||| Sbjct 175871 ACCATC--GATCACA-TTAACTGTTACAACATTTAATCCGGCAAGAACAGCTGAAGCAGG 175927 Query 138536 ATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGATCC 138595 |||||| |||||||| || ||| || | ||| | |||||| | | | ||| || | Sbjct 175928 ATTAGTGCCATGTGCAGATATTGGAATTAAACAAATATTTCTATCCTTTTGTCC--ATTC 175985 Query 138596 TTGA--TGATATGCT-TGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTT 138652 | | |||||| | | || ||| | |||| ||| || || || | || || Sbjct 175986 ATAATGTGATATTTTCTTAATACATAATAAACCTGTATATTCTCCTTGAGCACCACTATT 176045 Query 138653 AGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCATTTCTGTAAGTCATC 138712 ||| ||| |||| || || | ||| || |||||||||||||| | | | ||| Sbjct 176046 AGGCATTAAGGATACAGCCTCCATCTATGTTATGTCACATAACCATTTTTCAACATTATC 176105 Query 138713 TATTATCTTTTGATAACCCATGGTCTGTATCATAGGTGTATGTGGATGCACGTTGGCAAA 138772 | | | || ||| || || || || | | |||||||| | | || Sbjct 176106 AGTCAATTCTTAATATCCTTAAGTGCAAGACAATGGGGAAAATGGATGCAATTAAGAGAA 176165 Query 138773 TTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAACTACC 138832 | ||| |||| ||||||| || | | | ||||| ||||||||| |||||||| Sbjct 176166 TCCTTAAAATGAGACAGGCAACATGAAAGAAGTAGGATTTAATTTCATTGTACAACTACC 176225 Query 138833 AAGTGGAACCATACCATTTACTAATGAGAAATCTTTAGAGCATAACTCATAGATATATCT 138892 | || || ||| || |||||||| ||| || | | ||| | | ||| || || Sbjct 176226 TAATGAAATCATTGACTTAGTTAATGAGATATCCTTTTATCTTAAATAGTTGATGTACCT 176285 Query 138893 CATCATGTCAGTTTCACTGTG 138913 || ||| ||||||||||| || Sbjct 176286 CAGCATTTCAGTTTCACTATG 176306 Score = 100 bits (110), Expect = 3e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 139271 ACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGAT 139330 ||||||||| | ||||| || || | ||||||||| | || |||||| ||||| || || Sbjct 176669 ACCATGATAAGTGGCATACAAACCTGCCATATTTGCCAACAATGCTTGAGCTGTACAAAT 176728 Query 139331 GTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTA 139390 || || ||||| |||||||| ||||| | ||||||||||||| || | ||| || Sbjct 176729 ATTTGAAGTAGCTTTTTCTCTTCTGATATGTTATTCTCTAGTTTGTAATGACATTCTATA 176788 Query 139391 TGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTT 139450 || | || || | | || || ||| | ||| | || || || ||||| || Sbjct 176789 AGCTGATTTTCCATTGGCATCTTTGGATATACCAATAATACGTCCTGGCATTTTTCTTTT 176848 Query 139451 ATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAATACC 139510 | | ||| |||||||| || ||||| || || || | |||||||| | ||| Sbjct 176849 GAATTCATCTTCAACAGCAAAGAAAGCTGCATGTGGTCCACCAAAACCCATAGGTACACC 176908 Query 139511 AAACCTTT 139518 ||| |||| Sbjct 176909 AAATCTTT 176916 >seq1007 Length=4367 Score = 129 bits (142), Expect = 7e-25 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| || || | ||||||||| | |||||||||||||| || || |||| | || || Sbjct 2460 CATGGCTTCAGAAGCTGCAGTTCCCTCATCTAATAGAGAAGCATTCGCTAAATGAAAACC 2519 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||||| | || || | ||||||||||| ||||| ||||| ||||| || || | || Sbjct 2520 AGTAAGATTGGTAATTAATGTTTGGTAATTCAATAACGCTTCTAATCTACCTTGTGCAAT 2579 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 || |||||||| || || |||| ||||||||||||||||| || | || |||| ||| Sbjct 2580 TTCTGCTTGATAAGGTGTATAAGCGGTGTACCAACTAGGATTTTCTAAAATATTTCTCTG 2639 Query 140039 TATGAC 140044 || || Sbjct 2640 GATAAC 2645 Score = 125 bits (138), Expect = 8e-24 Identities = 500/774 (65%), Gaps = 30/774 (4%) Strand=Plus/Plus Query 138173 ATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAA 138232 |||||||||||||| ||| || || || || || || || || ||||| ||||| || Sbjct 741 ATGTTTTGCTACACAAATTGGCCCAACTCCTGGTCCACCTCCACCATGAGGAATTGCAAA 800 Query 138233 TGTCTTATGTAAATTTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTAGAC 138291 || || || | ||||| ||||| ||||||||||| ||| | | ||| | | | Sbjct 801 AGTTTTGTGAAGATTTAAGTGACAAACATCTGCACCTATA-TTTCCTGGCGAAGTGAAGC 859 Query 138292 CTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGA 138351 | || || ||||| | |||||||||||| | || || ||||||||||| || || | | Sbjct 860 CAACTTGAGCATTCATATTTGCACCATCCATGTAAACTTGACCACCATTTTCGTGGATTA 919 Query 138352 --TCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAAT 138409 ||| || || | | | ||| ||||| | ||||| ||| |||||||||||||| Sbjct 920 AGTCTGTAATTTC--TTTTACGTTATCATCAAAGAAACCATAAGTAGATGGATATGTAAT 977 Query 138410 CATAATACATGAGAGTTCAAATGTATTCATGAT----TGCTTTCTTCTCTAGATCTTTGA 138465 ||| | | || | || | | || ||| | |||| | || ||||| || Sbjct 978 CATGAAA----GCAGATAAATTATCTTTATGCTCTTCCACTTTAGCTTTTAAATCTTCGA 1033 Query 138466 TGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTG 138525 ||||| | || || || | || || | || ||||| | || || || || | Sbjct 1034 AATCTATTTGTCCGTCTTCTAGATTTTTTACCACCACTACTTTAAGACCAGCAATCACCG 1093 Query 138526 CACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCAT 138585 || ||||||||| ||||| || || || | || || | ||| | |||||| | | | | Sbjct 1094 CAGAAGCAGGATTGGTTCCGTGAGCAGATTGAGGAATTAAACAAATATTTCTATGACCTT 1153 Query 138586 CTCCTGAT-CCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGAT 138644 || ||| || ||||||||| || | | | || ||||| ||||| || | | Sbjct 1154 GACC-GATAGATTTTTGATATGCTCTAATCACCATTAAACCGGCATATTCACCTTGAGCT 1212 Query 138645 CCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCA--CATAACCATTTCT 138702 || | || || || | ||| | | ||||||| || || | || | | ||||| Sbjct 1213 CCAGAATTTGGCTGAAGTGAAGTTGCCGCAAAACCAGTAATCGTAGCCAAATCTTTTTCT 1272 Query 138703 GTAAGTCATCTATTATCTTTTGATAACCCATGGTCTGTATCATAGGTGTATGTGGATGCA 138762 |||| | |||| || |||||||| | || | | || | ||||| | Sbjct 1273 -AAAGT-TTTGATTAATTTCTGATAACCTTCAGCTTGATTAACCGGCACAAAAGGATGAA 1330 Query 138763 CGTTGGCAAATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTG 138822 | | | | |||||| || | || |||| ||||| |||||||| |||||||| | Sbjct 1331 TTGCGCCCCAATGTTCCCAAGAAAGTGGAATCATTTCTGTAGCTGCATTCAGTTTCATAG 1390 Query 138823 TGCAACTACCAAGTGGAACCATACCATTTACTAATGAGAAA-----TCTTTAGAGCATAA 138877 | ||| ||| || | || |||| || |||||| ||| ||||| ||| | Sbjct 1391 TACAAGAACCTAGAGAAATCATAGAATGCGTTAATGATAAATCTTTTCTTTCGAG----A 1446 Query 138878 CTCATAGATATATCTCATCATGTCAGTTTCACTGTGATACTTATTGAATACTTC 138931 | | || ||||| | ||||| || || || | || || ||||| || ||||| Sbjct 1447 CGCTTA-ATATAACGCATCAATTCTGTCTCTGTATGGTATTTATTAAAAACTTC 1499 >seq53 Length=274744 Score = 100 bits (110), Expect = 3e-16 Identities = 124/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||| |||||||||||| |||||||| || |||||||||||||| ||||||| ||||| Sbjct 201171 ACAGCAATAGGACCTAATCCAGGACCACCTCCTCCATGTGGAATGGAGAATGTTTTATGA 201112 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGA-CCTACCTGTGC 138301 | ||| | |||||| ||||| || || | | | || || || | || |||| ||| Sbjct 201111 AGATTCAAATGACAAACATCAGCTCCTAAATATCCAGGGGATG-TATATCCAACCTATGC 201053 Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAA 138348 ||| | ||| || ||||| | |||||| || |||| ||||||| Sbjct 201052 ATTCATATTAGCTCCATCCATATATACTAATCCTCCATGATCATGAA 201006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578981420871920