Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq379 100 3e-16 seq25 87.8 2e-12 >seq379 Length=55362 Score = 100 bits (110), Expect = 3e-16 Identities = 276/419 (66%), Gaps = 13/419 (3%) Strand=Plus/Minus Query 75908 ACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAAT 75967 |||||| |||||||||| | || || |||||||| || |||| ||||| ||||||||| Sbjct 4731 ACTGGATTACCATATATGTTATATAAAGATGCTTGCAATTAGAAAAGTAATCAAAAGAAT 4672 Query 75968 TTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGAT 76027 | || ||||| || || ||||| || || |||||| | | | ||| ||| Sbjct 4671 CTAGGTACAATAAAAAGTAGTAATCTATGTACTGAAATTATCTAATTTACATCACCAGAT 4612 Query 76028 GAGACGGCTGTTTGCAATTTGGC----ATCAATCGCCCTTCCAAAGTATGTCAATGAAGA 76083 || | |||||||| ||| | || || ||| | ||||| |||| ||||| Sbjct 4611 GAAATTGCTGTTTGTAATCTTGCTAGTATTAATT----TATAAAAGTTAATCAAAGAAGA 4556 Query 76084 GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 | |||||||||| ||| || | || || || || | | || | |||||| Sbjct 4555 TAAA---ACTTTTGATTTTGATTAATTGTTGGAGATTACTAAATTAATCACGACAAATCT 4499 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCG 76203 || ||| ||||| || |||||||| ||| | || | | ||||| | Sbjct 4498 TAATATAGTAATTGATTTGAACTTTTATCCAGTTAAATAAGCAGAATACAGTAATAAAAG 4439 Query 76204 ACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT-TATTTTGTGCCGCT 76262 ||| ||||||||||| | || || ||||| | || |||| ||| || || | Sbjct 4438 ACATAGACCTATTGGAATAGGAGTCTAAGGTTTTGCAGATGCATTATAAAGAATGAAAAT 4379 Query 76263 ACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321 || ||||||||||||| || ||| || |||||||| || |||||||| || ||| Sbjct 4378 AC-CATTTGATTCAGAAGATGCCTTAGAATTGAATGCTAAGATTTTTGAAACTATCTAT 4321 >seq25 Length=399112 Score = 87.8 bits (96), Expect = 2e-12 Identities = 199/296 (67%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 64922 TTCATGGCGAAACATATTCAAAATTGATTGACAAATACATTAAGGATGGATCTGAAAAGA 64981 ||||| |||||||||||| |||||||| | || || | |||| | |||||| | Sbjct 188408 TTCATTCTGAAACATATTCACTTTTGATTGATACCTATATAACTGATGAAAATGAAAAAA 188467 Query 64982 AGCAGTTATTTGAAGCCATCCAAACTGTACCATGT-ATTGAGAAGAAGGCGAAATGGGCA 65040 | | | | | || || | | ||| || ||| ||| | ||||| || | |||||| Sbjct 188468 ACTATCTTCTCCATGCTATAGATAATGTGCC-TGTAATTTAAAAGAAAGCAATGTGGGCA 188526 Query 65041 ATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGT 65100 ||||||||| || | | || | || || || || | | |||| ||||| | | Sbjct 188527 ATGAAATGGATTAATAATAA---TGATTCATTTGCTGAAAGATTAATTGCCTTTGCTTCT 188583 Query 65101 GTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGT 65160 || || || || ||||| || || ||||| || ||||| | |||| | || || | Sbjct 188584 GTTGAAGGCATTTTCTTTTCTGGTTCATTTTGTGCTATATTTTGGATCAAAAAAAGATCA 188643 Query 65161 CTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCA 65216 | ||||| || || ||| ||||||||| | ||||| ||||||| ||||| || Sbjct 188644 TTGATGCCTGGACTCACCTTTTCAAATGAATTAATTTCAAGAGATGAAGGTCTTCA 188699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596552105596480