Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq1056 140 1e-28 >seq1056 Length=3914 Score = 140 bits (154), Expect = 1e-28 Identities = 240/346 (69%), Gaps = 2/346 (1%) Strand=Plus/Minus Query 40691 GCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCG 40750 ||||||||||| | || | || ||||||||| || | ||| || || || || || Sbjct 2357 GCGCGCCTTGAGCTTACCAAAGGTGATGATCTGCGCCACATGGTCCGCGCCATATTTGCG 2298 Query 40751 GGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGG 40810 ||| || ||||||||||||| || ||| || ||||||||||||| ||||| Sbjct 2297 CTGGACATAGCGGATCACCTCGCCGCGCCGCGTTTCGCAAAAGTCGATGTCGAAGTCGGG 2238 Query 40811 CATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTC 40870 ||| ||||| || |||||||| ||||| || || || | || || || |||||| || Sbjct 2237 CATCGACACACGTTCGGGGTTGAGGAAACGTTCAAACAGCAGACCCAGCCGCAGCGGATC 2178 Query 40871 GAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGG 40930 ||||||||||| || | | || || || || || | ||||| ||||| || Sbjct 2177 AAGGTCGGTGATGGTCAGCGCCCATGCCACAAGGCTGCCCGCACCCGAGCCGCGCCCCGG 2118 Query 40931 GCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTA 40990 || || | | | |||| ||| ||||| |||| ||||| || |||| |||||||| Sbjct 2117 CCCCACGGGAATGTCATTCTGCTTGGCCCATTGGATAAAGTCGGCCACGATCAGGAAGTA 2058 Query 40991 CGACGG-GAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAG 41035 | ||| || ||||| || |||| ||| | ||||| | | ||| Sbjct 2057 -GCCGGCAAAACCCATGCGGTTGATGATGCCCGTCTCGAAATCGAG 2013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164840207629928