Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq1056 131 5e-26 >seq1056 Length=3914 Score = 131 bits (144), Expect = 5e-26 Identities = 238/346 (69%), Gaps = 2/346 (1%) Strand=Plus/Minus Query 40151 GCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCG 40210 ||||||||||| | || | || ||||||||| || | ||| || || || || || Sbjct 2357 GCGCGCCTTGAGCTTACCAAAGGTGATGATCTGCGCCACATGGTCCGCGCCATATTTGCG 2298 Query 40211 GGTGACGTACTGGATGACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGG 40270 ||| || |||| |||||||| || ||| || ||||||||||||| ||||| Sbjct 2297 CTGGACATAGCGGATCACCTCGCCGCGCCGCGTTTCGCAAAAGTCGATGTCGAAGTCGGG 2238 Query 40271 CATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTC 40330 ||| ||||| || |||||||| ||||| || || || | || || || |||||| || Sbjct 2237 CATCGACACACGTTCGGGGTTGAGGAAACGTTCAAACAGCAGACCCAGCCGCAGCGGATC 2178 Query 40331 GAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGG 40390 ||||||||||| || | | || || || || || | ||||| ||||| || Sbjct 2177 AAGGTCGGTGATGGTCAGCGCCCATGCCACAAGGCTGCCCGCACCCGAGCCGCGCCCCGG 2118 Query 40391 GCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTA 40450 || || | | |||| ||| ||||| |||| ||||| || |||| |||||||| Sbjct 2117 CCCCACGGGAATGTCATTCTGCTTGGCCCATTGGATAAAGTCGGCCACGATCAGGAAGTA 2058 Query 40451 CGACGG-GAACCCCATCTGGATGATCATGTCGATCTCGTACTGGAG 40495 | ||| || ||||| || |||| ||| | ||||| | | ||| Sbjct 2057 -GCCGGCAAAACCCATGCGGTTGATGATGCCCGTCTCGAAATCGAG 2013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163320249975228