Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq1730 86.0 1e-12 >seq1730 Length=1430 Score = 86.0 bits (94), Expect = 1e-12 Identities = 285/431 (66%), Gaps = 12/431 (3%) Strand=Plus/Minus Query 4160 CAGACGCTGATGAACAC-CGTGCAGGC-GTCATCCGCGTTTCTGCAGACG-ATTAATATT 4216 ||||||||| | ||| | | |||||| | |||| || || || ||| || || || ||| Sbjct 1033 CAGACGCTGGT-AACGCGCATGCAGGAAGCCATC-GCCTTCCT-CAGCCGCATCAACATT 977 Query 4217 CTGCCGGTCGCAGAAATGAAGGGTGAGAAAATCGGCGTCGGTGTGACCGGTACTATCGCC 4276 | ||||| | || ||||||| ||||||||||| | ||| |||| | |||| | Sbjct 976 GTCCCGGTTCCGCAACTGAAGGGCCAGAAAATCGGCCTGACCGTGGGCGGTTCCATCGGC 917 Query 4277 AGCACGACTGATACCTCGGGCGATGATGAGCGTAAGACCGCA--GACTTCACCGCGCTTG 4334 |||| || || ||| | ||| ||||| || | | ||| ||| ||||| ||| | Sbjct 916 AGCAACACCGACACCGCCAGCGGCGATGAACGC--GTCGGCACCGACCCCACCGGGCTGG 859 Query 4335 AATCCAACAAGTACGAGTGCGACCAGATTAACTTTGACTTCCACCTGAAATATAAAACCC 4394 | | | ||||| ||| |||||| ||||| ||| | ||| || | | Sbjct 858 ATGCGTTCGGTTACGAATGCAACCAGAACAACTTCGACACCGTTCTGCGCTACGCCAAGC 799 Query 4395 TCGACCTGTGGGCGCGTTTTCAGGACTTCCAGCGCCGCATCCGCGACGCCATTGTCAAGC 4454 | ||| ||||||||| || | ||||||||| |||||||| || ||| | | | Sbjct 798 TGGACATGTGGGCGCAGTTCCCCGACTTCCAGACGCGCATCCGTGATGCCTGCCTGATCC 739 Query 4455 GTCAGGCGCTCGATTTCATCATGGCCGGTTTTAACGGTACCACCCGCGCCGCCACCTCTG 4514 |||||||||| || ||| | || || || || ||| | ||| ||| | Sbjct 738 GTCAGGCGCTGGACACCATTTGCGTGGGCTTCAATGGCACCCACTATGCCAAGACCACCA 679 Query 4515 ACCGCACCAAAAATCCGATGCTGCAGGATGT-TGCCGTCGGCTGGCTGCAGAAATACCGC 4573 |||||||| |||||| |||| |||||| | ||| |||||||| ||| |||| Sbjct 678 ACCGCACCGCCAATCCGCTGCTTCAGGATTTCAATCGT-GGCTGGCTTCAGGCGATCCGC 620 Query 4574 AATGAAGCCCC 4584 | |||||||| Sbjct 619 GACGAAGCCCC 609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95050151947808