Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq392 105 8e-18 seq336 102 1e-16 >seq392 Length=52916 Score = 105 bits (116), Expect = 8e-18 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 194233 TTACGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCTCAAAAAGGAACTTG 194291 ||| | || ||| |||| || |||||||||||| || |||| | |||| || ||||| Sbjct 5318 TTAAGAATTCCTTAAATTGGAGATAAATTTTGTAGTAGACATGGAT-AAAAGGGTACTTG 5260 Query 194292 TGGTATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATAT 194351 ||| |||| |||| |||||||||| | |||| ||| | |||||| |||||| | Sbjct 5259 TGGAATGACTTATAGACAAGAAGATTTACCATATACTCTTGTAGGTATATCTCCAGATCT 5200 Query 194352 TATTATCAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATT 194403 | ||| |||||| |||||||||| || |||||||| || | | |||||| Sbjct 5199 AACTATTAATCCACATTGTATTCCATCAAGAATGACAATAGGTAATATTATT 5148 >seq336 Length=64408 Score = 102 bits (112), Expect = 1e-16 Identities = 358/549 (65%), Gaps = 19/549 (3%) Strand=Plus/Minus Query 172449 GATATAGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGG 172508 |||| ||| ||||| ||||| | | ||||||| || | |||| ||| ||| ||| Sbjct 40925 GATAAAGGAGTTAAGATTTGGGAAGGTAATGGTACTAGAGAATATTTGGATAGCATTGGG 40866 Query 172509 TTTACTGAAAGAAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCA 172568 || | | ||| | ||| ||||||||| ||| | ||||||| | ||||||||||| Sbjct 40865 TTATCAAATAGATAGGAACATGATTTAGGACCAGTCTATGGATATTAATGGAGACATTTT 40806 Query 172569 GGGGCTCAATATATCGACTGTGATACAGATTACACAGGACAAGGAGTGGACCAATTAAGT 172628 |||||| |||||| || || | | ||||| | |||| || | ||||||| Sbjct 40805 GGGGCTGAATATAAGGATTGCTAAAGTGATTATAATAATTAAGGTGTTG----ATTAAGT 40750 Query 172629 CAAA-----CTATTAATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATA 172683 ||| | ||||| ||| |||| || ||||| ||||||||||| || | | Sbjct 40749 TAAAGAGGTCATTTAATTACTTA-AAAATAATCCAGATAGTAGAAGGATAATATTATCTG 40691 Query 172684 GTTGGAATGTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCATACTTTAGCACAAT 172743 |||||| | | | | | |||||| | || || || ||| | || ||| Sbjct 40690 CCTGGAATCCAAGTGATTTAAAATAAATGGCATTACCGCCATGTCATGTAATGTCATAAT 40631 Query 172744 TTTATGTCAGaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAG 172803 ||| |||| | ||| ||| | || |||| | | ||| | |||||| |||||| | Sbjct 40630 TTTTTGTC-GCAAATGGGAAAT-TGAG-TTGTATGATGTATTAGAGATCATGTGATTTTG 40574 Query 172804 GATTGGGGGTACCTTATAATATTGGATTTTATTCATTTTTAATACTT--GTGTTAAGTAA 172861 | ||||| | || | |||||| | |||| |||| | ||||| |||| ||| Sbjct 40573 GTTTGGGAATTCCATTTAATATAGCTAGTTATGCATTGCT--TACTTAAATGTTGGCTAA 40516 Query 172862 ATGGTGCAATTTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTC 172921 || ||||| | | ||| | ||| ||||| || || ||| || | ||| Sbjct 40515 GGAATGTAATTTGAATTTGGGAGAATTTGTTCATGTATTAGGGGATACACATATCTATAG 40456 Query 172922 AAATCATGTTGAACCTTTAAAG-GTTCAATTAAAAAGAAAACCATATACTTTTCCAAATG 172980 |||||||| || |||||||| | | |||| ||||| ||||||| ||||||| | | Sbjct 40455 TAATCATGTGGATGCTTTAAAGAGATAAATT-GAAAGAGTACCATATCCTTTTCCGATTC 40397 Query 172981 TTAAATTTA 172989 | ||| ||| Sbjct 40396 TAAAAATTA 40388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632471052242480