Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq874 132 1e-26 >seq874 Length=6986 Score = 132 bits (146), Expect = 1e-26 Identities = 280/409 (68%), Gaps = 8/409 (2%) Strand=Plus/Plus Query 18673 GTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTA 18732 |||||| ||||| ||||||||||| || | ||| || ||||| || || ||| ||| Sbjct 1805 GTTATAGAACATCTCGATGTAATCGAACACATCCTGTCGGGCTTCCTCGCGGGTTTTGTA 1864 Query 18733 GATCTTTTTCTTTATCCGTTCACGTTTCAGTAGC-TG-GAAAAAACTTTCTGCGACTGCG 18790 | | | || || || ||||| || || || ||| || || || || || || Sbjct 1865 GGTGCGCCTGCGGATACGCTCGCGTTTGAG--GCATGAGAAGAAGCTCTCCGCCACAGCA 1922 Query 18791 TTGTCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAAC 18850 ||||| || ||||| ||||| |||||||| | |||||| ||| | | |||| Sbjct 1923 TTGTCGTGGCAGTTGCCGCGCCGGCTCATCGAGTGCTCCAGATTGTGGGCCCGGATGAAC 1982 Query 18851 GACTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCACCTG-CTT 18909 | ||| || ||| ||| |||| ||| ||||| ||||| | ||||||| | | | Sbjct 1983 GCAGCCCAGTCCATGCTGGTGAACTGCGAGCCCTGATCCGAATGGATCAGCACCCGGCCT 2042 Query 18910 TTGAGGATTACGTCGCCACACGGCCATC-AGAAGTGCATTCAGGACAATATCCTTTGTCA 18968 ||| || || || ||||| || ||||| | ||| || | || || | ||| | ||| Sbjct 2043 TTG-GGTTTGCGGCGCCAGACAGCCATATACAAG-GCCTGCAAAACCACATCGGTGGTCT 2100 Query 18969 TCCGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCA 19028 | | ||||| |||||||| | || ||||| ||||| |||| || ||||||| Sbjct 2101 GCTTGCTTTGCATCGACCAGCCCACCACCCGACGCGAAAACAGATCAAGCACGACAGCCA 2160 Query 19029 GATACAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATGTCCGTTACCCA 19077 |||| |||| || ||||||||||||||||||||| || ||||| Sbjct 2161 GATAGGCAAAGCCCTCCATAGTCCGGATGTAGGTGATGTCTGTCACCCA 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127100459041440