Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq1532 196 1e-45 seq1104 183 7e-42 seq1730 168 1e-37 >seq1532 Length=1741 Score = 196 bits (216), Expect = 1e-45 Identities = 293/413 (71%), Gaps = 5/413 (1%) Strand=Plus/Minus Query 5786 TTCCTGCAGGCGATCAACATGGTCGGCGTGAACGAACTGAAGGGCCAGAAGGTTGGCGTT 5845 |||||| | |||||||||| | |||| ||| | | | || ||| | | | | || Sbjct 1482 TTCCTGAATTCGATCAACATCATTCCGGTGATCGATCAGGAAGGTCAGGTGCTGGCCATT 1423 Query 5846 GGCATCACCGGCACCATTGCCGGCCGCACCGACACCAGCGGCAACGGCGAGCGCAATCCG 5905 || | || ||||||| ||||| |||||||||||||||||| | | ||||| ||| Sbjct 1422 TCCACCGCCCGCACCATCGCCGGTCGCACCGACACCAGCGGCGGCACCCGCCGCAACCCG 1363 Query 5906 TCCGATCCGACCTCGCTG-GTGTCCAA---CACCTACGAGTGCCAGAAGACCGACTTTGA 5961 |||| |||| | | | | | || | |||| ||| |||||||||| ||||| Sbjct 1362 ACCGACCCGAA-TGACAGCGCGGAAAAGCGCCGCTACCTCTGCAAGAAGACCGATTTTGA 1304 Query 5962 CACCGCCCTGCCCTATGCCCGCCTGGACGCCTGGGCGCATCGCCCCGAGTTCCAGACCCT 6021 | || | | ||||||||| |||| || ||| || || || |||||||| || Sbjct 1303 CTGGGCGCAGTCCTATGCCCTGATGGATGCTTGGCGCCACAAACCGGAATTCCAGACGCT 1244 Query 6022 GATCCGCGACGCGATCATCCAGCGCCAGGCACTGGACCGGATCATGATCGGCTGGCACGG 6081 ||| ||||| |||||| | | | |||| | ||||||||||||||||||||| |||| Sbjct 1243 GATGCGCGATGCGATCCTGAAACAGCAGGGCCGCGACCGGATCATGATCGGCTGGAACGG 1184 Query 6082 CACCAGCATTGCCATCAACACCGACCGCGTCGCCAATCCGATGCTGCAGGACGTGAACAA 6141 ||||||| || | | ||||||||||| ||||| || ||||||||||||||||||| Sbjct 1183 CACCAGCGCGGCGGCCCAGACCGACCGCGTGGCCAACCCCATGCTGCAGGACGTGAACAT 1124 Query 6142 GGGCTGGCTGCAGAAGTACCGCGAGCATGCGCCCGAGCGCGTCATGACCGATG 6194 |||||| | ||||| ||||| |||| ||| || |||||| ||||| Sbjct 1123 CGGCTGGGTCAAGAAGCTGCGCGACAATGCCGCCGCGCAGATCATGAGCGATG 1071 >seq1104 Length=3343 Score = 183 bits (202), Expect = 7e-42 Identities = 497/756 (66%), Gaps = 56/756 (7%) Strand=Plus/Plus Query 15927 CCGC-ACTGTGGCCACCGCTATCGTCGGCGTCGTCTGCACCGCGCAGGACGCAGACGCCA 15985 |||| || || |||||| || || ||||| | || ||||||| ||| || ||||||| Sbjct 1518 CCGCGACGGTCGCCACCTCTGTCATCGGCATGGTTGTGACCGCGCCGGATGCGGACGCCA 1577 Query 15986 CGCTGTTCCCCCTCGACCGACCGGTGCTGCTGACCGACGTGCTGGGCGCCGTCGGCAAGG 16045 || |||| || ||||| ||||| ||| | || | || ||| ||| | | ||||| Sbjct 1578 CGATGTTTCCGCTCGATACGCCGGTCCTGATTTCCAATGTCCTGACCGCTCTGGCCAAGG 1637 Query 16046 CCGGCACCAGCGGCACGCTGCGCGCCACGCTGCAGGCCATTGCCGACCAGGCCAACGCCA 16105 | || || | |||||| ||||| || | |||| |||||| ||| | | || | | | Sbjct 1638 CAGGTACTACCGGCACCTTGCGCCCCGCACTGCTGGCCATCGCCAATATTGTCAGCCCGA 1697 Query 16106 TTACCGTGGTGGTGCGCGTCACCGAAGGTTCCGACGACAGCGCCACCACCG----CCAAC 16161 || |||||||||||||| || ||| ||| |||| | | | |||| Sbjct 1698 ATATTGTGGTGGTGCGCGT-------GG--CCGTGGAC-GCGCAAAATCAGGATGCCAAG 1747 Query 16162 GTGATCGGCAAGAAGGACGGCGCCACCTTCACCGGCATGCAGGCGCTGCTGGTGGCTGAG 16221 || | || | | |||| || ||| |||||||||||||||||| || |||| ||| Sbjct 1748 GTCTTGGGTACGGCCAGCGGCCCCGCCTATACCGGCATGCAGGCGCTGTTGATGGCCGAG 1807 Query 16222 GCGCAGGTAGGCGTGCGTCCGCGCATCCTCGGCGCACCCGGTCTGGACACCCAGCCGGTT 16281 || || || ||| |||||||| || ||||| || || ||||| || ||| || Sbjct 1808 GCCAAGACGGGATCGCGCCCGCGCATTCTTGGCGCGCCGGGGCTGGATACGCAGGACGTA 1867 Query 16282 TCGGCCGCACTG---GCGGTCATCGCCAAGAAGCTGCGCGCGATGGCCTACGTGAGCTGT 16338 | || ||| ||||| |||||| ||||||| | ||||| | | || Sbjct 1868 ACCAACGGCCTGATCGCGGTG---GCCAAGCGCCTGCGCGGCTTTGCCTATGCCA--TG- 1921 Query 16339 GCCGCCAGTGC----CTCGGTCAGCGAGGCCATCGCCTATCGCGAGCAGTTCAGCCAGCG 16394 |||| || || | || | ||||||||||||||| ||||| | ||| | ||| Sbjct 1922 GCCG--AGGGCGAAACCCG--CGACGAGGCCATCGCCTACCGCGATGAATTCGGGGCGCG 1977 Query 16395 CGAGCTGATGCTGATCTATCCCGACTTCGTCGCGTTCAACACTGCCGACGCCACCACCAG 16454 ||| |||||||||||| |||| | || ||| | | || | || Sbjct 1978 CGAATTGATGCTGATCTGGCCCGCC---------------ACAGCCAAGGGCAGCGCCGA 2022 Query 16455 CATGGCGTTCGCGACCGCCCGCGCCCTGGGCCTGCGCGCGATGATCGATGAGCAGCAGGG 16514 | ||| | | |||| |||||||||||||| ||||| || ||| Sbjct 2023 TA---------CGATTGGCTGCGCGCTGGGCCTGCGCGCCTATATCGACCAGACCGTGGG 2073 Query 16515 CTGGCACAAATCGATCTCCAATGTGGCCGTCGCCGGCGTGACCGGCATCAGCCGCGACGT 16574 |||||||||| |||| |||||||||| | ||||||| |||||||| | ||||| Sbjct 2074 CTGGCACAAAACGATTTCCAATGTGGTGATTACCGGCGTTACCGGCATGGCCAAGGACGT 2133 Query 16575 GCACTGGGACCTGCAAGATCCGGCGACCGACGCTGGCCTGCTGAACGCCGCCGACATCAC 16634 | ||||| || | ||| | |||||||| | |||||||||||| || ||||||| Sbjct 2134 GTCCTGGGCGATGGATGATGACACCACCGACGCGGCCCTGCTGAACGCGGCAAACATCAC 2193 Query 16635 CACCCTCATCAACTCCAACGGTTACAAGTTCTGGGG 16670 ||| || ||| | |||||| || ||| ||||| Sbjct 2194 CACGCTGATCTGTTACAACGGCTATCGGTTTTGGGG 2229 >seq1730 Length=1430 Score = 168 bits (186), Expect = 1e-37 Identities = 604/922 (66%), Gaps = 38/922 (4%) Strand=Plus/Minus Query 5744 GTGCAGCAGAGCCTCGAAGCCCGCATGCAGGAAAGCAGTACCTTCCTGCAGGCG-ATCAA 5802 || ||||||| || | | | |||||||||||| || ||||||| ||| || ||||| Sbjct 1039 GTTCAGCAGACGCTGGTAACGCGCATGCAGGAAGCCATCGCCTTCCT-CAGCCGCATCAA 981 Query 5803 CATGGTCGGCGTGAACGAACTGAAGGGCCAGAAGGTTGGCGTTGGCATCACCGGCACCAT 5862 ||| ||| || |||||||||||||||| | ||| | | | ||| |||| Sbjct 980 CATTGTCCCGGTTCCGCAACTGAAGGGCCAGAAAATCGGCCTGACCGTGGGCGGTTCCAT 921 Query 5863 TGCCGGCCGCACCGACACCAGCGGCAACGGCGAGCGCAATCCG-TCCGATCCGACCTCGC 5921 | | || |||||||||| | || || || ||| || | |||| || ||| || Sbjct 920 CGGCAGCAACACCGACACCGCCAGCGGCGATGAACGC-GTCGGCACCGACCCCACCGGGC 862 Query 5922 TGGTGTCCAACACCTACGAGTGCCAGAAGACCGACTTTGACACCGCCCTGCCCTATGCCC 5981 ||| | | ||||| ||| | ||| | |||| ||||||| |||| ||| ||| Sbjct 861 TGGATGCGTTCGGTTACGAATGCAACCAGAACAACTTCGACACCGTTCTGCGCTACGCCA 802 Query 5982 GCCTGGACGCCTGGGCGCATCGCCCCGAGTTCCAGACCCTGATCCGCGACGCGATCATCC 6041 |||||| |||||||| |||||| |||||||| | ||||| || || | | Sbjct 801 AGCTGGACATGTGGGCGCAGTTCCCCGACTTCCAGACGCGCATCCGTGATGCCTGCCTGA 742 Query 6042 AGCGCCAGGCACTGGACCGGATCATGATCGGCTGGCACGGCACCAGCATTGCCATCAACA 6101 || ||||| |||||| || | |||| | |||||| | ||||| | || Sbjct 741 TCCGTCAGGCGCTGGACACCATTTGCGTGGGCTTCAATGGCACCCACTATGCCAAGACCA 682 Query 6102 CCGACCGCGTCGCCAATCCGATGCTGCAGGACGTGAACAAGGGCTGGCTGCAGAAGTACC 6161 || ||||| |||||||||| |||| ||||| | || |||||||| ||| | || Sbjct 681 CCAACCGCACCGCCAATCCGCTGCTTCAGGATTTCAATCGTGGCTGGCTTCAGGCGATCC 622 Query 6162 GCGAGCATGCGCCCGAGCGCGTCATGACCGATG-CGTCGATGGCAGC---------GGCA 6211 |||| | || ||||| || ||||| |||| ||||| ||| || |||| Sbjct 621 GCGACGAAGCCCCCGAACGGCTCATG---GATGAGGTCGAGGGCGGCAAGGTGACGGGCA 565 Query 6212 AGATCAAGGTGGGCGGTACCGGCGCTGACTACGGGCAACATTGATGCCCTGGTGATGGGA 6271 || ||| |||| | ||| ||||| | || | || | |||||| ||||| Sbjct 564 AGGTCACCTATGGCGCGGCGGGC---GACTA-TGACAGTCTCGACTCTCTGGTG-TGGGA 510 Query 6272 ---CTTGG--TCGCCAACATGATCG-ACCCGTGCATCAGAAGAT-CCGAGCCTGGTGTGA 6324 | || |||| |||| || | ||||| |||||| |||| | || |||| Sbjct 509 CGCCAAGGAATCGC--TCATGCCCGAATGGGTGCA--GGAAGATCCCGACCTTGTCGTGA 454 Query 6325 TC-TGCGCCGCCAGCTGGTGCACGACAAGTATTTCCCGATCATCAACCGTGACAACGCCC 6383 || || ||||| |||||||||| ||||||||||||||| |||||||||| | | | | Sbjct 453 TCGTGGGCCGCAAGCTGGTGCATGACAAGTATTTCCCGCTCATCAACCGCACCGAAGGCA 394 Query 6384 CCACCGAGAAGGTCGCGGCCGAACTGATCCTGGGCGCCAAGCGCATCGGTGGCCTGCAGC 6443 | ||| | | | ||| | ||| ||| || || | | || ||||||| | Sbjct 393 GCCTCGAAATGATGGCGCGTCAGGCAATCATGGCCGACATTCAGCTGGGCGGCCTGCCGG 334 Query 6444 CGGTCATCGTGCCGTTCTTCCCGGCCAAGTCGCTGATGGTGACC-AGCCTCAGCAACCTG 6502 || ||| || | ||||||||| ||||| | | | ||| || | | |||||| Sbjct 333 TGGAGCGCGTCCCCTACTTCCCGGCGAAGTCCTTCCTCATCACCAAGTATTCG-AACCTG 275 Query 6503 TCGCTGTACTGGCAGATTGCCTCGCGCCGCCGTCACATCATCGAGCAGCC-GAACAAGAA 6561 ||| |||| |||| | |||| ||||| || |||| || ||||| | || Sbjct 274 TCGAAATACTACCAGAAGGGTTCGCAGCGCCGCCAGATCAAGGATCAGCCTTCGCGCGAT 215 Query 6562 CCGCGTCGCCAACTTCGAGTCGTCCAATGATGACTACGTGGTGGAGGACTACGGTCTGGG 6621 | | ||| || ||| ||||||||||||||| ||| ||||| ||||| |||| | | Sbjct 214 CAG-GTCACCGACTATCAGTCGTCCAATGATGCCTATGTGGTCGAGGATTACGATTTCAC 156 Query 6622 CGCGGTGGCCGAGAACATCGAG 6643 ||| | | ||| || |||||| Sbjct 155 GGCGCTTGTCGAAAATATCGAG 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107155414700924