Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq392 109 7e-19 seq109 96.9 4e-15 seq193 87.8 2e-12 seq160 87.8 2e-12 seq115 87.8 2e-12 >seq392 Length=52916 Score = 109 bits (120), Expect = 7e-19 Identities = 129/172 (75%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 193437 TTACGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTG 193495 ||| | || ||| |||| || |||||||||||| || |||| |||| || ||||| Sbjct 5318 TTAAGAATTCCTTAAATTGGAGATAAATTTTGTAGTAGACATGGAT-AAAAGGGTACTTG 5260 Query 193496 TGGTATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATAT 193555 ||| |||| |||| |||||||||| | |||| ||| | |||||| |||||| | Sbjct 5259 TGGAATGACTTATAGACAAGAAGATTTACCATATACTCTTGTAGGTATATCTCCAGATCT 5200 Query 193556 TATTATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATT 193607 | |||||||||| ||||||||||||| |||||||| || | | |||||| Sbjct 5199 AACTATTAATCCACATTGTATTCCATCAAGAATGACAATAGGTAATATTATT 5148 >seq109 Length=170935 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 51957 ACATTTAAAATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAA 52016 ||||||| | ||||||| || || || | |||||||||| ||||||||||| |||||| Sbjct 47094 ACATTTAGATTGAATTTATCTGTGTGTACACCATATAATGCAGATTTTGATGGAGATGAA 47035 Query 52017 ATGAATTTACATGTTCCTCAATCATATG 52044 |||||| | ||||||||| ||||||||| Sbjct 47034 ATGAATATGCATGTTCCTTAATCATATG 47007 >seq193 Length=107194 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 193518 GATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATT 193577 ||||||||||| ||| ||||| |||||||||||||||||||||||||| || | || Sbjct 106521 GATATGCCATTCTCAGAGTCAGGAATGGTACCAGATATTATTATTAATCCTCATGCTTTT 106580 Query 193578 CCATCCAGAATGACCATT 193595 ||||| |||||||| ||| Sbjct 106581 CCATCTAGAATGACTATT 106598 >seq160 Length=123887 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 193518 GATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATT 193577 ||||||||||| ||| |||||||||||||||||||||||||||||||| || | | Sbjct 73261 GATATGCCATTCTCAGAATCAGGTATGGTACCAGATATTATTATTAATCCTCATGCTTTC 73320 Query 193578 CCATCCAGAATGACCATT 193595 ||||| |||||||| ||| Sbjct 73321 CCATCTAGAATGACTATT 73338 >seq115 Length=163409 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 193518 GATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATT 193577 ||||||||||| ||| ||||| |||||||||||||||||||||||||| || | || Sbjct 161350 GATATGCCATTCTCAGAGTCAGGAATGGTACCAGATATTATTATTAATCCTCATGCTTTT 161291 Query 193578 CCATCCAGAATGACCATT 193595 ||||| |||||||| ||| Sbjct 161290 CCATCTAGAATGACTATT 161273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635158973416880