Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq392 100 4e-16 seq85 87.8 2e-12 seq109 84.2 3e-11 >seq392 Length=52916 Score = 100 bits (110), Expect = 4e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 201577 AAATTGGAGATAAATTTTGTTCTGGA-ATGGCCCAAAAAGGAACTTGTGGTATGATTTAT 201635 |||||||||||||||||||| | || |||| |||| || |||||||| |||| |||| Sbjct 5305 AAATTGGAGATAAATTTTGTAGTAGACATGGAT-AAAAGGGTACTTGTGGAATGACTTAT 5247 Query 201636 GCACAAGAAGATATGCCGTTTACACAATCGGGTATGACCCCGGATATTATAATCAATCCA 201695 |||||||||| | || | ||| | ||||| | || ||| | | || |||||| Sbjct 5246 AGACAAGAAGATTTACCATATACTCTTGTAGGTATATCTCCAGATCTAACTATTAATCCA 5187 Query 201696 AATTGTATACCATCAAGAATGACCATA 201722 ||||||| |||||||||||||| ||| Sbjct 5186 CATTGTATTCCATCAAGAATGACAATA 5160 >seq85 Length=202968 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 12/232 (5%) Strand=Plus/Minus Query 201951 CTTAAACATATGGTTAAGGATAAAATGCATGCGAGAAGTCATGGTCAAGTAACAACATTA 202010 ||||| |||||||||| |||||||| ||||| ||| | | |||| | | || | || Sbjct 63911 CTTAAGCATATGGTTATAGATAAAATTCATGCCAGAGCTAAAGGTCCAATGGAAAAACTA 63852 Query 202011 CATCGTCAACCAAACTGTGGTCGGT----CCCAAGGTGGTGGATTAAGATTTGGAGAAAT 202066 |||| |||| ||| | || || ||| |||||||| | |||||||||| Sbjct 63851 ACTCGTTAACC----TGTTGAAGGAAGAGCCAAAGATGGTGGATAGCGTATTGGAGAAAT 63796 Query 202067 GGAAAAAGATTGTATTTTGGTTCATGGGGCCACACAATTTTTAAATGAAAGAATGTT--T 202124 ||||| ||||||| |||| | | |||| || || | || |||| ||| ||| | || | Sbjct 63795 GGAAAGAGATTGTTTTTTAGCTTATGGTGCATCAAATTTATTAATTGAGAGATTATTGAT 63736 Query 202125 TTGTATTCAGATCCTTTTCAAATCGATGTGTGTACAAATTGTGGAATGATTA 202176 || || | ||||| || | | |||| ||| || ||||||||| ||| Sbjct 63735 TTCTAGT--GATCCATTCAATGTGTATGTTTGTGAAATATGTGGAATGTTTA 63686 >seq109 Length=170935 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 53058 TGAATTTAGCTATGGCTAAAGCTTACAATGCAGATTTTGATGGAGATGAAATGAATTTAC 53117 |||||||| || || || | | || |||||||||||||||||||||||||||||| | | Sbjct 47084 TGAATTTATCTGTGTGTACACCATATAATGCAGATTTTGATGGAGATGAAATGAATATGC 47025 Query 53118 ATATTCCTCAGTCTTATGAAGCTACTGCAGAATT 53151 || ||||| | || ||||| | | |||||||| Sbjct 47024 ATGTTCCTTAATCATATGAGACAATAGCAGAATT 46991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655260783914000