Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq392 105 8e-18 seq336 102 1e-16 seq109 100 4e-16 >seq392 Length=52916 Score = 105 bits (116), Expect = 8e-18 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 192990 TTACGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTG 193048 ||| | || ||| |||| || |||||||||||| || |||| |||| || ||||| Sbjct 5318 TTAAGAATTCCTTAAATTGGAGATAAATTTTGTAGTAGACATGG-ATAAAAGGGTACTTG 5260 Query 193049 TGGTATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATAT 193108 ||| |||| |||| |||||||||| | |||| ||| | |||||| |||||| | Sbjct 5259 TGGAATGACTTATAGACAAGAAGATTTACCATATACTCTTGTAGGTATATCTCCAGATCT 5200 Query 193109 TATTATTAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATT 193160 | |||||||||| |||||||||| || |||||||| || | | |||||| Sbjct 5199 AACTATTAATCCACATTGTATTCCATCAAGAATGACAATAGGTAATATTATT 5148 >seq336 Length=64408 Score = 102 bits (112), Expect = 1e-16 Identities = 358/549 (65%), Gaps = 19/549 (3%) Strand=Plus/Minus Query 171661 GATATAGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGG 171720 |||| ||| ||||| ||||| | | ||||||| || | |||| ||| ||| ||| Sbjct 40925 GATAAAGGAGTTAAGATTTGGGAAGGTAATGGTACTAGAGAATATTTGGATAGCATTGGG 40866 Query 171721 TTTACTGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCA 171780 || | | ||| | ||| ||||||||| ||| | ||||||| | ||||||||||| Sbjct 40865 TTATCAAATAGATAGGAACATGATTTAGGACCAGTCTATGGATATTAATGGAGACATTTT 40806 Query 171781 GGGGCTCAATATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGT 171840 |||||| |||||| || || || | ||||| | |||| || | ||||||| Sbjct 40805 GGGGCTGAATATAAGGATTGCTAAAGTGATTATAATAATTAAGGTGTTG----ATTAAGT 40750 Query 171841 CAAA-----CTATTAATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATA 171895 ||| | ||||| ||| |||| || ||||| ||||||||||| || | | Sbjct 40749 TAAAGAGGTCATTTAATTACTTA-AAAATAATCCAGATAGTAGAAGGATAATATTATCTG 40691 Query 171896 GTTGGAATGTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAAT 171955 |||||| | | | | | |||||| | || || || || | || ||| Sbjct 40690 CCTGGAATCCAAGTGATTTAAAATAAATGGCATTACCGCCATGTCATGTAATGTCATAAT 40631 Query 171956 TTTATGTCAGaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAG 172015 ||| |||| | ||| ||| | || |||| | | ||| | |||||| |||||| | Sbjct 40630 TTTTTGTC-GCAAATGGGAAAT-TGAG-TTGTATGATGTATTAGAGATCATGTGATTTTG 40574 Query 172016 GATTGGGGGTACCTTATAATATTGGATTTTATTCATTTTTAATACTT--GTGTTAAGTAA 172073 | ||||| | || | |||||| | |||| |||| | ||||| |||| ||| Sbjct 40573 GTTTGGGAATTCCATTTAATATAGCTAGTTATGCATTGCT--TACTTAAATGTTGGCTAA 40516 Query 172074 ATGGTGCAATTTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTC 172133 || ||||| | | ||| | ||| ||||| || || ||| || | ||| Sbjct 40515 GGAATGTAATTTGAATTTGGGAGAATTTGTTCATGTATTAGGGGATACACATATCTATAG 40456 Query 172134 AAATCATGTTGAACCTTTAAAG-GTTCAATTAAAAAGAAAACCATATACTTTTCCAAATG 172192 |||||||| || |||||||| | | |||| ||||| ||||||| ||||||| | | Sbjct 40455 TAATCATGTGGATGCTTTAAAGAGATAAATT-GAAAGAGTACCATATCCTTTTCCGATTC 40397 Query 172193 TTAAATTTA 172201 | ||| ||| Sbjct 40396 TAAAAATTA 40388 >seq109 Length=170935 Score = 100 bits (110), Expect = 4e-16 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 50407 ACATTTAAAATGAATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAA 50466 ||||||| | |||||||| || || || | |||||||||| ||||||||||| |||||| Sbjct 47094 ACATTTAGATTGAATTTATCTGTGTGTACACCATATAATGCAGATTTTGATGGAGATGAA 47035 Query 50467 ATGAATTTACATGTTCCTCAATCATATG 50494 |||||| | ||||||||| ||||||||| Sbjct 47034 ATGAATATGCATGTTCCTTAATCATATG 47007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628512768322560