Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq114 102 8e-17 >seq114 Length=165420 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| | |||||||||||| | || ||||| |||| ||||| ||||| Sbjct 164283 CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAA 164342 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | || ||| || ||| | || || | || | ||| || || Sbjct 164343 AGTGTTCTTCCATCTTCTAATTATTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 164402 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||| |||| | || | | || | ||||||| ||||| || Sbjct 164403 ATTCCTTCCTTGTC-TTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAAC 164461 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||| || || ||||||||||| ||||||| ||| Sbjct 164462 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 164509 Score = 100 bits (110), Expect = 3e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| | |||||||||||| | || ||||| |||| ||||| ||||| Sbjct 163562 CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAA 163621 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 163622 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 163681 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||| |||| | || | | || | ||||||| ||||| || Sbjct 163682 ATTCCTTCCTTGTC-TTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAAC 163740 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTA 137417 |||| ||| | || || ||||| |||||||| || || |||||||||| ||| Sbjct 163741 ATCAAGAGTGATGGTTTTACCGGTTAATGTTTTAACAAAAATTTGCATAGTTTA 163794 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| | |||||||||||| | || ||||| |||| || || ||||| Sbjct 153364 CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATATTATAATCTGAA 153305 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 153304 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGA 153245 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| ||| |||| | || | | || | ||||||| |||||||| Sbjct 153244 ATTCCTTCTTTGTC-TTAAATTTTAGCCTTGACAGCATCTATAGTGTCTGATGGTTCTAC 153186 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTT 137416 |||| ||| | || || || || |||||||| || || |||| ||||| || Sbjct 153185 ATCAAGAGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTACATAGTTT 153133 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| |||| || | ||| ||||| || | || ||||| |||| ||||| ||||| Sbjct 165079 GCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAATCTGA 165138 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||| || ||||| | || ||| || ||| | || || | || | ||| || || Sbjct 165139 AAGTGTTCTTCCATCTTCTAATTATTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 165198 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCTGTGGGTTCTA 137362 || ||||| ||||| ||| |||| | || | | || | ||||||| ||||| | Sbjct 165199 GATTCCTTCCTTGTCT-TAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAA 165257 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | |||| ||| | ||||| || || ||||||||||| ||||||| ||| Sbjct 165258 CATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 165306 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| | |||||||||||| | || ||||| |||| || || ||||| Sbjct 139733 CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATATTATAATCTGAA 139674 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 139673 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 139614 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || ||| |||| | || | | || | ||||||| ||||| || Sbjct 139613 ATTCCTTCCTTATC-TTAAATTTTAGCCTTGACAGCGTCAATGGTGTCTGATGGTTCAAC 139555 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| ||| | ||||| || || |||||||| || || ||||||||| Sbjct 139554 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTAACAAAAATTTGCATA 139506 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| | |||||||||||| | || ||||| |||| ||||| ||||| Sbjct 144111 CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAA 144052 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | || || || ||| | || || | || | ||| | || Sbjct 144051 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAAGTGGG 143992 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||| |||||| | | | ||| | ||||||| ||||| || Sbjct 143991 ATTCCTTCCTTGTC-TTAAATTTTTGCCTCGACAGCTTCAATAGTGTCTGATGGTTCAAC 143933 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | || || || || |||||||| || || |||| ||| Sbjct 143932 ATCAAGAGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTTCAT 143885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488529673447200