Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq701 96.9 3e-15 >seq701 Length=18236 Score = 96.9 bits (106), Expect = 3e-15 Identities = 482/757 (64%), Gaps = 38/757 (5%) Strand=Plus/Minus Query 26044 ACCTTGTTGCTTCTCTATTGCATGAACAAATTGAGATGCTTCCATAAGACTTTCATGTGT 26103 ||||||| || ||| || | || ||||| || | ||| | ||||||| || | || Sbjct 15578 ACCTTGTCTCTCCTCAATCACTTGTACAAACTGTGCTGCCTGCATAAGAGATTGAATGGT 15519 Query 26104 TCCTGTATCCAGCCAAGTGAAACCTCTTCCTAGTTTACAGACACGTAAAGTC---TTTTC 26160 || ||||||||||| | | ||||| | | |||||| || || ||| | Sbjct 15518 ACCAGTATCCAGCCATG------CCGTTCCTCTATCAAAGACACCTACTTTCAATTTTCC 15465 Query 26161 TT--TCCAGTACATCT-CATTTATATCCGTAATCTCTAACTCCCCTCTAGCAGAAGGTTT 26217 || | ||| ||| |||| || || ||||| ||||| || || | | ||||||||| Sbjct 15464 TTGTTTCAGATATTCTGCATTAATGTCTGTAATTTCTAATTCTCCACGGGGAGAAGGTTT 15405 Query 26218 AACGCTCTTAGCTTTCTGTATAACAGAATTATCGTAAAAGTACAAGCCTGTGATTGCGTA 26277 | | || || | | || ||||||||||| || || || | |||| | || | Sbjct 15404 GATATTTTTTGCAATTTCTACTACAGAATTATCATAGAAATATAGCCCTGGAACAGCAAA 15345 Query 26278 GTTGCtttttggtgtttttggtttttCTTCAATACTCACCACTGTACCTTCAGA--ATCA 26335 || ||| || ||| ||||||||||||||| | | || ||| | |||| Sbjct 15344 ATTAGATTTAGGGTTTTGTGGTTTTTCTTCAATTGAAATTGCATTA--TTCTGTTCATCA 15287 Query 26336 AACTCAACAACACCAAATCTTTCAGGATCATTTACGTGATACCCAAAGATATTAGCTCCA 26395 || || || || ||| ||||||| || || || ||||| |||| ||||| | || Sbjct 15286 AATTCTACCACGCCATATCTTTCTGGGTCTGCCACTTGATAGGCAAA--TATTA-CGCCT 15230 Query 26396 CCATTCTTTTCAATATGTTCTTTAGCAGAATCTAAAATGCTACCAAAACTCTGA-CCAAA 26454 || |||| | ||| | ||| | ||| | ||| | | | || ||| | Sbjct 15229 CC------TTCAGTCTGTGCC---GCATTTTGTAATA-GCTGAGACATTCCAGAGCCATA 15180 Query 26455 GAATAAATTATCACCTAGCACAAGTGCTACAGAATCTTCACCAATAAAGTTCTCACCAAT 26514 || | ||||| ||||| | || || || ||| || |||||||| | || || | Sbjct 15179 AAAAATGTTATCTCCTAGGATTAGGGCAACTTTATCATCTCCAATAAATTCTTCTCCTAG 15120 Query 26515 AATAAACGCTTCTGCTAAACCTTTTGGGCTATCCTGTATTGCATACTGTAGGGAAATACC 26574 |||||| || | ||| || || | || || |||| | ||| || || | | Sbjct 15119 AATAAATGCCTGTGCCAATCCATCAGGACTTGGCTGTTCTTTATA----AGAAAACTTAC 15064 Query 26575 AAAAGA----AGAACCATCACCTAGAAGATTTACAAAATTAATTTGATCTTCTGGTGTTG 26630 | | || ||||| || || | ||| | |||| ||| | || || | Sbjct 15063 ATCCTATCTGAGCGCCATCTCCCAGTAATTTTTCGAAATGGGGCAAATCATGAGGAGTAG 15004 Query 26631 TAATTATTAGTATTTCCCTAATTCCAGAAAGCATTAGGACAGAGAGTGGATAATAAATCA 26690 ||| |||| || || ||||||||| | |||||| || | || |||||||||| Sbjct 15003 AAATGATTAAAATCTCATTAATTCCAGCCAACATTAGTGTTGATAAGGGGTAATAAATCA 14944 Query 26691 TAGGTTTATCGTAAATTGGTAATAGTTGTTTACTAACCCCTTTAGTAACTGGGTAAAGCC 26750 | |||||||| |||| ||| | || ||||||||| || || ||| | ||| | | | Sbjct 14943 TTGGTTTATCATAAACTGGCATTAATTGTTTACTCACTGCTAAAGTTAATGGATGCAAAC 14884 Query 26751 TTGTTCCACTACCACCTGCTAAGATAATACCTTTCAT 26787 ||| ||| ||| || ||||| ||||| |||||||| Sbjct 14883 GTGTACCAGAACCTCCGGCTAAAATAATTCCTTTCAT 14847 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/221 (69%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 27208 GGTATTAGTTTTTCTGGATGATGATATGCTCCAAAATTATTTGAACAATTTGTTATAACT 27267 || || | |||||||||| ||| | || ||| |||| || || ||||| |||| ||| Sbjct 13703 GGAATCAATTTTTCTGGAAAATGGTTTGGCCCATAATTGTTAGAGCAATTGGTTAAGACT 13644 Query 27268 GTCGGAATACCATAAGTACGATGCCACGCTCTTACCAAATGATCGCTTGCAGCTTTAGAT 27327 | || | ||||| ||| ||| | |||||||| ||||| || || ||||| || Sbjct 13643 ATAGGTAAGCCATACGTATCATGATAAGCTCTTACAAAATGGTCTGATGATGCTTTGGAA 13584 Query 27328 GCAGCATATGGACTACTTGGTTTATAAGGATTCTGTTCTGTAAACGGATAATCTCCTTCT 27387 |||| || ||| | ||| | ||| | | |||||||| | || || | ||| Sbjct 13583 GCAGAGTAAGGAGAATGTGGATCATACTTAGTGGTCTCTGTAAA---AAAACCTTCATCT 13527 Query 27388 TCCAGATCACCATACACTTCATCTGTTGAAATATGATGGAA 27428 | || | ||| | ||||||||||| |||| ||||||||| Sbjct 13526 CCTAGTGCTCCAAAGACTTCATCTGTAGAAACATGATGGAA 13486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475416458003520