Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq808 174 5e-38 >seq808 Length=10308 Score = 174 bits (192), Expect = 5e-38 Identities = 399/593 (67%), Gaps = 27/593 (5%) Strand=Plus/Plus Query 188647 ATTGGACAAGAAAAAGCAAAACGTCAATTAGCTGTATCAGTTTATAATCATTATAAGCGC 188706 ||||| ||||| |||| ||| ||||| | || |||||||||| |||||||| | Sbjct 9180 ATTGGTCAAGATCAAGCCAAAAAACAATTGTCAATAGCAGTTTATAACCATTATAAAAGA 9239 Query 188707 ATTAATGCTCTTAATGaaaaatcaaaaaatgatgatggagtaaagatcaaaaaaTCTAAT 188766 || ||| || | ||| ||||| | || | || | |||| ||||| Sbjct 9240 CTT------CTTCATAATAAAGACGAAAATAAATCTGTCGAAA---TAGAAAAGTCTAAC 9290 Query 188767 GTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGAT 188826 | || | || ||| || || |||| |||||| | || || |||| | ||| | Sbjct 9291 ATAATTATGGTGGGCGAAACAGGAACAGGGAAAACACTTTTAGCAAAAACCATTGCTAAG 9350 Query 188827 ATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTA 188886 ||| | || || | ||| ||||| || |||||||||||| ||||||||| Sbjct 9351 CAATTAAACGTTCCGTTTTGTATTGTAGATGCTACCATTTTAACAGAAGCAGGTTATGTA 9410 Query 188887 GGTGAAGATGTGGAAAACGTATTGCTTCG---TTTAATCCAAGCAGCTGATTACGATATC 188943 || |||||||| |||| | ||| | | |||||| | || ||||| ||| | Sbjct 9411 GGAGAAGATGTAGAAAGTATTTTGTCTAGACTTTTAATG---GTGGCGGATTATGATGTT 9467 Query 188944 GAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCA 189003 ||| |||||| |||||||| | ||| || ||| | ||||||||||| ||||||||| Sbjct 9468 GAAAAGGCGGAAAAAGGAATTGTTTTTATTGACGAAATTGATAAAATTGCCAGAAAATCA 9527 Query 189004 GAAAGCACATCC----ATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATT 189059 || | |||| |||||| ||||||| ||||| ||||| || || |||| |||||| Sbjct 9528 GACA----ATCCGAGTATTACCAGAGATGTTTCTGGTGAAGGGGTTCAACAAGGTTTATT 9583 Query 189060 AAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCA 189119 || | | ||||| | ||| || ||||| |||||||| || | ||||| ||| | Sbjct 9584 GAAGCTTCTAGAAGGAAGTATTGTAAATGTTCCACCTCAAGGAGGAAGAAAACATCCTGA 9643 Query 189120 CCAAGAAATGC-TTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTG 189178 |||| |||| | || || || | || ||||| || |||||| || ||||| |||| Sbjct 9644 CCAA-AAATACATTCAAGTAAACACGCAGAATATTTTATTTATTGCAGGCGGAGCTTTTG 9702 Query 189179 ATGGTCTTGAAAACATTATCAAGAGACGCGCTACAAAATCAA-CTTTAGGTTT 189230 | || || || | || || ||||| | ||| | || ||| | ||||||| Sbjct 9703 ACGGAATTAAAGAAATCATTGAGAGAAG-GCTCAATAAACAAGCGATAGGTTT 9754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591862550158208