Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq11 95.1 2e-14 >seq11 Length=551047 Score = 95.1 bits (104), Expect = 2e-14 Identities = 168/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 142968 GATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGAACTT 143027 ||| | ||||| | | || |||||| ||| | ||||| || |||||||||||| | Sbjct 285699 GATGATGATGAATTTAAAACATGGAAATAAAGAAATGATCCAGTATTGCATATAGAATTA 285640 Query 143028 AGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATA 143087 || | |||||| ||| ||| | || || || | | || ||||| | || || || Sbjct 285639 AGAAAATGGGCAGATTGTTTGTTAATTGCTCCTCTTTCAGCGAATACTATGGCTAAGATT 285580 Query 143088 GCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAA 143147 | || ||| |||| ||||||||| ||||| | | | ||||| |||||| |||||| Sbjct 285579 TCTAATGGTTTATGTGATAATTTATTAACAAATGTTGCTAGAGCATGGGATTACAATAAA 285520 Query 143148 CCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAA 143207 || | || || ||| || ||||||| | |||| || |||| || || ||||| Sbjct 285519 CCAATGATATTAGCTCCTGCAATGAATACTATGATGTATGAGAATCCAATCACTAAAAAA 285460 Query 143208 CATAT 143212 || || Sbjct 285459 CAAAT 285455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903384707466560