Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq114 100 2e-16 seq56 86.0 4e-12 seq507 82.4 5e-11 >seq114 Length=165420 Score = 100 bits (110), Expect = 2e-16 Identities = 174/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 33503 ATATACAAATAAAATCGTCA-CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCT 33561 ||||||| | |||||| | | ||||||||||| | || || || || ||||| || Sbjct 165059 ATATACAGAGAAAATCATTAGCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCC 165118 Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 |||| ||||| ||||| || ||||| | | | || || |||| |||||| |||||||| Sbjct 165119 TTTTAAATGTTATAATCTGAAAGTGTTCTTCCATCTTCTAATTATTTTCCTGCAAAAATG 165178 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | | | | ||| | || | ||||| ||||| |||||| | | ||| ||| Sbjct 165179 AGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTT-AGCCTTGACAGCGTC 165237 Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | ||||| || ||| || |||| ||||| || || || ||||| ||||||||||| Sbjct 165238 AATAGTGTCTGATGGTTCAACATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAA 165297 Query 33741 GATCTGCAT 33749 || | ||| Sbjct 165298 TATTTACAT 165306 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| || | || || || || ||||| || |||| ||||| ||||| || Sbjct 141191 CCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAA 141132 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || || |||| ||||| |||||||| | | | | ||| | || Sbjct 141131 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGA 141072 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| || | || ||| ||||| || ||| || Sbjct 141071 ATTCCTTCCTTGTCTTAAATTTTAGCCTTGA-CAGCATCAATAGTGTCTGATGGTTCAAC 141013 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 |||| ||||| |||||||||||||| ||||| ||||| || |||||| || Sbjct 141012 ATCAAGAGTGATTGTTTTACCTGTTAATGTTTTAACAAAAATTTGCATATTT 140961 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| || | || || ||||| ||||| || |||| || || ||||| || Sbjct 153364 CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATATTATAATCTGAA 153305 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || || |||| ||||| |||||||| | | | | ||| | || Sbjct 153304 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGA 153245 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| | | ||| || | ||||| || ||| || Sbjct 153244 ATTCCTTCTTTGTCTTAAATTTT-AGCCTTGACAGCATCTATAGTGTCTGATGGTTCTAC 153186 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 |||| ||||| |||||||| ||||| ||||| ||||| || | ||||||| Sbjct 153185 ATCAAGAGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTACATAGTT 153134 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| || | || || ||||| ||||| || |||| ||||| ||||| || Sbjct 164283 CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAA 164342 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || || |||| |||||| |||||||| | | | | ||| | || Sbjct 164343 AGTGTTCTTCCATCTTCTAATTATTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 164402 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| || | || |||| ||||| || ||| || Sbjct 164403 ATTCCTTCCTTGTCTTAAATTTTAGCCTTGA-CAGCGTCAATAGTGTCTGATGGTTCAAC 164461 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || ||||| ||||||||||| || | ||| Sbjct 164462 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 164509 >seq56 Length=265680 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||| || | || || ||||| ||||| ||||||| ||||| ||||| | Sbjct 113498 CACCTCCTCTTAATCTCAATACTAAATGAAGAGTTGATTCTTTTTAAATGTTATAATCTG 113439 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || || | | | || || | ||| ||||| ||||||||||| | | ||||| | | Sbjct 113438 AAAGAGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGAG 113379 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | |||||||| || ||| || | | |||| || | |||||| | ||| Sbjct 113378 GAATTCCTTCTTTATCTTAAATCTT-AGCCTTAACAGCATCAATGGTGTCTGAAGGTTCT 113320 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || |||| ||||| || || || || || ||||| ||||| || | |||| Sbjct 113319 ACATCAAGTGTGATAGTCTTTCCCGTCAAGGTTTTAACAAAAATTTACATA 113269 >seq507 Length=36014 Score = 82.4 bits (90), Expect = 5e-11 Identities = 170/249 (68%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 33503 ATATACAAATAAAATCGTCA-CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCT 33561 ||||||| | |||||| | | ||||||||||| | || || || || ||||| || Sbjct 35735 ATATACAGAGAAAATCATTAGCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCC 35676 Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 |||| ||||| ||||| || ||||| | | | || || |||| ||||| |||||||| Sbjct 35675 TTTTAAATGTTATAATCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATG 35616 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | | | | ||| | || | ||||| ||||| |||||| | | ||| ||| Sbjct 35615 AGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTT-AGCCTTGACAGCGTC 35557 Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | ||||| || ||| || |||| ||||| ||||| || || || || || || || Sbjct 35556 AATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTTCCAGTCAAGGTCTTAACGAA 35497 Query 33741 GATCTGCAT 33749 || | ||| Sbjct 35496 AATTTACAT 35488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328694601736320