Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq454 113 1e-19 seq56 96.9 8e-15 seq337 93.3 1e-13 seq128 91.5 3e-13 seq287 87.8 4e-12 seq114 87.8 4e-12 >seq454 Length=44262 Score = 113 bits (124), Expect = 1e-19 Identities = 152/208 (73%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || |||||||||||||| || ||| | || || ||| ||||||||| | Sbjct 41483 TTTGTCAAGACACTCACAGGAAAAACTATTACTCTTGATGTTGAACCATCTGACACAATT 41424 Query 206239 GAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || | || ||||| ||| || |||| || |||||||| || || ||||||| Sbjct 41423 GATGCTGTCAAAGCTAAA-ATCTAAGACAAGGAAGGAATCCCACCCGATTAATAAAGACT 41365 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||||||| ||||| | || |||||||| || || | | ||||| ||| || | || Sbjct 41364 TATCTTCGCTGGAAAATAATTAGAAGATGGTAGAACACTTTCAGATTATAACATCTAAAA 41305 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || || || |||||| | ||||||||| Sbjct 41304 GGAATCAACACTTCACTTAGTTTTGAGA 41277 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||||||||| || || ||| | || || ||| ||||||||| | || | Sbjct 41705 AAGACACTCACAGGAAAGACAATTACTCTTGATGTTGAACCATCTGACACAATTGATGCT 41646 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || |||| || |||||||| || || |||||||||||||| Sbjct 41645 GTCAAAGCTAAA-ATCTAAGACAAGGAAGGAATCCCACCCGATTAACAAAGACTTATCTT 41587 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||| | || ||||| ||||| || | | || || ||| | | || || || Sbjct 41586 TGCAGGAAAATAATTAGAAGACGGAAGAACACTTTCAGACTATAACATTTAAAAGGAATC 41527 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 || |||||| | ||||||||| Sbjct 41526 AACACTTCACTTAGTTTTGAGA 41505 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/208 (71%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || ||||||||||| || || ||| | || || ||| ||||||||| | Sbjct 41255 TTTGTCAAGACACTCACAGGAAAGACAATTACTCTTGATGTTGAACCATCTGACACAATT 41196 Query 206239 GAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || | || ||||| ||| || |||| || |||||||| || || ||||||| Sbjct 41195 GATGCTGTCAAAGCCAAA-ATCTAAGACAAGGAAGGAATCCCACCCGATTAATAAAGACT 41137 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 |||||| || ||||| | || ||||| ||||| || | | || || ||| | | || Sbjct 41136 TATCTTTGCAGGAAAATAATTAGAAGACGGAAGAACACTTTCAGACTATAACATTTAAAA 41077 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || || || |||||| | ||||||||| Sbjct 41076 GGAATCAACACTTCACTTAGTTTTGAGA 41049 >seq56 Length=265680 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||| || ||||| | || || ||| ||| ||||| | || | Sbjct 113285 AAAACCTTGACGGGAAAGACTATCACACTTGATGTAGAACCTTCAGACACCATTGATGCT 113344 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| |||| |||||||||||| || || ||||| | || || Sbjct 113345 GTTAAGGCTAAGATTTAAGATAAAGAAGGAATTCCTCCTGATCAATAAAGATTGATTTTT 113404 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| | ||||||||||| ||| | | ||||| ||| | | ||||| || Sbjct 113405 GCAGGAAAGCAACTTGAAGATGGAAGAACTCTTTCAGATTATAACATTTAAAAAGAATCA 113464 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 |||||||| | || |||||| Sbjct 113465 ACTCTTCATTTAGTATTGAGA 113485 >seq337 Length=64228 Score = 93.3 bits (102), Expect = 1e-13 Identities = 154/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||||| |||||| ||||| || ||||||||||| || ||| | || || ||| Sbjct 62311 AAAATGTAA---ATATTTGTTAAAACACTAACAGGAAAAACTATTACTCTTGATGTTGAA 62367 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || ||||| | || | || ||| || ||| |||| || |||||||| || Sbjct 62368 CCATCAGACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCT 62427 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || ||||||| || || || |||||| | || ||||||||||| || | | || Sbjct 62428 GATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGAC 62487 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || ||| | | || || || ||||||||| | || |||||| Sbjct 62488 TATAACATTTAAAAGGAATCAACTCTTCACTTAGTGTTGAGA 62529 Score = 87.8 bits (96), Expect = 4e-12 Identities = 153/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||||| |||||| ||||| || ||||||||||| || ||| | || || ||| Sbjct 61310 AAAATGTAA---ATATTTGTTAAAACACTAACAGGAAAAACTATTACTCTTGATGTTGAA 61366 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || ||||| | || | || ||| || ||| |||| || |||||||| || Sbjct 61367 CCATCAGACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCT 61426 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || ||||||| || || || |||||| | || ||||||||||| || | | || Sbjct 61427 GATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGAC 61486 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || ||| | | || || || ||||| ||| | || |||||| Sbjct 61487 TATAACATTTAAAAGGAATCAACTCTCCACTTAGTGTTGAGA 61528 Score = 87.8 bits (96), Expect = 4e-12 Identities = 153/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||||| |||||| ||||| || ||||||||||| || ||| | || || ||| Sbjct 63082 AAAATGTAA---ATATTTGTTAAAACACTAACAGGAAAAACTATTACTCTTGATGTTGAA 63138 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || ||||| | || | || ||| || ||| |||| || |||||||| || Sbjct 63139 CCATCAGACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCT 63198 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || ||||||| || || || |||||| | || ||||||||||| || | | || Sbjct 63199 GATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGAC 63258 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || ||| | | || || || ||||| ||| | || |||||| Sbjct 63259 TATAACATTTAAAAGGAATCAACTCTCCACTTAGTGTTGAGA 63300 >seq128 Length=150569 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || |||||| | || || || ||| || ||| | || | Sbjct 57851 AAAACCCTGACGGGAAAGACCATCACTCTTGATGTAGAGCCTTCAGATACAATTGATGCT 57910 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| |||| |||||||||||| || || ||||| | || || Sbjct 57911 GTTAAGGCTAAGATTTAAGATAAAGAAGGAATTCCACCTGATTAATAAAGATTGATTTTT 57970 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| | ||||||||||| ||| | | ||||| || | | ||||| || Sbjct 57971 GCAGGAAAGCAACTCGAAGATGGAAGAACTCTTTCAGATTATAATATTTAAAAAGAATCA 58030 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 ||||| || | || || ||||| Sbjct 58031 ACTCTCCATTTAGTATTAAGACT 58053 >seq287 Length=75303 Score = 87.8 bits (96), Expect = 4e-12 Identities = 153/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||||| |||||| ||||| || ||||||||||| || ||| | || || ||| Sbjct 526 AAAATGTAA---ATATTTGTTAAAACACTAACAGGAAAAACTATTACTCTTGATGTTGAA 582 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || ||||| | || | || ||| || ||| |||| || |||||||| || Sbjct 583 CCATCAGACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCT 642 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || ||||||| || || || |||||| | || ||||||||||| || | | || Sbjct 643 GATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGAC 702 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || ||| | | || || || ||||| ||| | || |||||| Sbjct 703 TATAACATTTAAAAGGAATCAACTCTCCACTTAGTGTTGAGA 744 Score = 87.8 bits (96), Expect = 4e-12 Identities = 153/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||||| |||||| ||||| || ||||||||||| || ||| | || || ||| Sbjct 2537 AAAATGTAA---ATATTTGTTAAAACACTAACAGGAAAAACTATTACTCTTGATGTTGAA 2593 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || ||||| | || | || ||| || ||| |||| || |||||||| || Sbjct 2594 CCATCAGACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCT 2653 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || ||||||| || || || |||||| | || ||||||||||| || | | || Sbjct 2654 GATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGAC 2713 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || ||| | | || || || ||||| ||| | || |||||| Sbjct 2714 TATAACATTTAAAAGGAATCAACTCTCCACTTAGTGTTGAGA 2755 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 206176 ATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACA 206235 |||||| ||||| || ||||||||||| || ||| | || || ||| || ||||| Sbjct 1541 ATATTTGTTAAAACACTAACAGGAAAAACTATTACTCTTGATGTTGAACCATCAGACACT 1600 Query 206236 GTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGA 206295 | || | || ||| || ||| |||| || |||||||| || || ||||| Sbjct 1601 ATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAATAAAGA 1660 Query 206296 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 206355 || || || || |||||| | || ||||||||||| || | | || || ||| | | Sbjct 1661 CTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAACATTTAA 1720 Query 206356 AAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || || || ||||| ||| | || |||||| Sbjct 1721 AAGGAATCAACTCTCCACTTAGTGTTGAGA 1750 >seq114 Length=165420 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | ||||| ||||| |||||| | || || ||| || ||||| | || | Sbjct 140980 AAAACATTAACAGGTAAAACAATCACTCTTGATGTTGAACCATCAGACACTATTGATGCT 141039 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||| |||| || ||||||||| || || ||||||| || || Sbjct 141040 GTCAAGGCTAAAATTTAAGACAAGGAAGGAATTCCACCTGATTAATAAAGACTCATTTTT 141099 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||| | || ||||||||||| || | | ||||| ||| | | || || || Sbjct 141100 GCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGATTATAACATTTAAAAGGAATCA 141159 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 ||||| ||| | || |||||| Sbjct 141160 ACTCTCCACTTAGTCTTGAGA 141180 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| |||||| | || || ||| || ||||| | || | Sbjct 153153 AAAACATTAACTGGTAAAACCATCACTCTTGATGTAGAACCATCAGACACTATAGATGCT 153212 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||| |||| |||||||||||| || || ||||||| || || Sbjct 153213 GTCAAGGCTAAAATTTAAGACAAAGAAGGAATTCCACCTGATTAATAAAGACTCATTTTT 153272 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||| | || ||||||||||| || | | ||||| || | | || || || Sbjct 153273 GCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGATTATAATATTTAAAAGGAATCA 153332 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 ||||| || | ||||||||| Sbjct 153333 ACTCTCCATTTAGTTTTGAGA 153353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181785276682666