Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq25 224 8e-54 seq253 214 1e-50 seq336 159 3e-34 seq35 138 9e-28 seq23 125 6e-24 seq711 95.1 1e-14 >seq25 Length=399112 Score = 224 bits (248), Expect = 8e-54 Identities = 532/788 (68%), Gaps = 18/788 (2%) Strand=Plus/Plus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGG-TTAGTCGGTTTGCGCA 43914 || || ||||| || || || || ||||| |||||||| |||| ||| | | || || Sbjct 188290 GCTTTCTTTGCAGCAAGTGATGGTATAGTAAATGAAAACTTGGCTTAATAATTCTGTACA 188349 Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||||| ||| | || ||||| ||||||||||||| ||| |||| || || || ||||| Sbjct 188350 -GAAGTACAAGTTCCTGAAGCTAGATGTTTTTATGGATTTTAAATGGCTATGGAGAATAT 188408 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 |||||| |||| || ||| |||| ||||| || || | |||| | || || | Sbjct 188409 TCATTCTGAAACATATTCACTTTTGATTGATACCTATATAACTGATGAAAATGAAAAAAA 188468 Query 44035 TCGATTGTTTA-ATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093 | || | | |||| ||||| | || |||| ||| || | |||||| ||||| Sbjct 188469 -CTATCTTCTCCATGCTATAGATAATGTGCCTGTAATTTAAAAGAAAGCAATGTGGGCAA 188527 Query 44094 TTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGG 44153 | |||||||| ||| |||||||| |||| ||| || | | || ||||| ||| | Sbjct 188528 TGAAATGGATTAATAATAATGATTCATTTGCTGAAAGATTAATTGCCTTTGCTTCTGTTG 188587 Query 44154 AAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 |||||||||||||||| || || ||| || ||||||||| | || ||| || |||| Sbjct 188588 AAGGCATTTTCTTTTCTGGTTCATTTTGTGCTATATTTTGGATCAAAAAAAGATCATTGA 188647 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273 ||||||| | || ||||||||||| ||||| | |||||||| | ||| || | Sbjct 188648 TGCCTGGACTCACCTTTTCAAATGAATTAATTTCAAGAGATGAAGGTCTTCATACAGACT 188707 Query 44274 TTGCTTG-CTT-GTTACTTGGATATCTAG--GAGACGATAAGCCTTCATGTAAGACAATT 44329 | ||||| ||| |||| | || ||| | | |||| | || ||| |||| Sbjct 188708 TCGCTTGTCTTCTTTAC--AAACATTTAGTTAATAAATTAAG---TAAT-TAA-CGAATT 188760 Query 44330 ACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCT 44389 || ||| || | || || | || ||| |||||||||| | ||| |||| Sbjct 188761 CATGAAATTATTTCATCTGCTGTTGAAATTGAAAAAGAATTTATCAGTGAAGCTCTACCA 188820 Query 44390 GTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGAT 44449 || | ||||| ||||||||| ||| ||||| |||||||||||| | |||||| Sbjct 188821 GTTGAATTAATTGGAATGAATTCTAATTTAATGAAATAATATATTGAATTTGTAGCAGAT 188880 Query 44450 CGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTT 44509 | ||| | || | | | || |||| |||| | | | || || ||||| | Sbjct 188881 AGATTAATATTTGCATTAGGAGCTCCTAAAATTTATAATTCAAAGAATCCTTTTGAATGG 188940 Query 44510 ATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATAT 44569 ||||| | || || || |||| ||||| || || || |||| | | |||||||| || Sbjct 188941 ATGGATATGATCTCCTTATAAGGTAAAACTAATTTCTTCGAAAGAAGAGTTGGAGATTAC 189000 Query 44570 CAGCGAATGGGCGTCATGA-TAACAAGT--GACAATAAATTTACTACGGATGAAGATTTC 44626 || | || || |||| ||| || | || || |||||||| ||||| || || Sbjct 189001 CAAAAAGCTGGAGTTATGAGTAAAAAATAAGATAAAGTATTTACTATGGATGCTGACTTT 189060 Query 44627 TAATTAAT 44634 | ||| || Sbjct 189061 TGATTCAT 189068 >seq253 Length=82967 Score = 214 bits (236), Expect = 1e-50 Identities = 541/812 (67%), Gaps = 12/812 (1%) Strand=Plus/Plus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 ||||| |||||||| | || | || || ||||| || || || || || || ||| Sbjct 29175 GAAAAGCATTTTATTAAGTATGTACTTGCCTTCTTTGCAGCTAGTGATGGTATTGTGAAT 29234 Query 43889 GAAAATTTGG-TTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTA 43947 ||||| |||| ||| | |||| || |||||| || | |||||||| ||||||| || Sbjct 29235 GAAAACTTGGCTTAATAATTTTGTACA-GAAGTTTAAGTTCCAGAAGCTAGATGTTTCTA 29293 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATAC 44007 ||| ||| | | || || || ||||||||||| |||| || || |||| ||||| Sbjct 29294 TGGATTTTAGTTAGCTATGGAGAATATTCATTCAGAAACCTATTCACTATTGATTGATAC 29353 Query 44008 GTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGC 44067 ||||| | |||| | || || || | || |||| || || | || |||| Sbjct 29354 TTACATAACTGATGAAAATGAAAAAAATTATCTACTTCATGCTATTGATAATGTGCCTGT 29413 Query 44068 GATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGA 44127 || || | || ||| ||||| | |||||||| ||| |||||||| |||| || Sbjct 29414 TATACAAAAGAAGGCAATGTGGGCTATGAAATGGATTAATGATAATGATTCATTTGCTGA 29473 Query 44128 ACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCAT 44187 | || | | || ||||| ||| ||||| || |||||||| || || ||| ||||| Sbjct 29474 AAGATTAATTGCTTTTGCTTCTGTTGAAGGTATATTCTTTTCTGGTTCATTTTGTGCCAT 29533 Query 44188 ATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAG 44247 || ||| |||| ||| || ||||||||||| | || ||||||||||| ||||| Sbjct 29534 TTTCTGGATAAAAAAAAGATCATTGATGCCTGGACTCACATTTTCAAATGAATTAATTTC 29593 Query 44248 TCGTGATGAAGGCTTACATTGCGATTTTGCTTG-CT-TGTTACTTGGATATCTAGGAGAC 44305 | |||||||| | ||| || || ||||| || |||| || | | | Sbjct 29594 AAGAGATGAAGGTCTTCATACAGACTTCGCTTGTCTACTTTACAAACATTTAATCAATAA 29653 Query 44306 GATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAA 44365 |||| | || ||| | |||| || || || | || || | || ||| || Sbjct 29654 ATTAAG---TAAT-TAA-AGAATTCATGAAATAATTTCATCTGCTGTTGAAATTGAAAAA 29708 Query 44366 GAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAAC 44425 |||||||| | ||| ||| | ||| | ||||| || |||||| | ||||||| Sbjct 29709 GAATTTATTAGTGAAGCTTTATCAGTAGAATTAATTGGTATGAATTCTAATATGATGAAA 29768 Query 44426 CAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTAT 44485 |||||||||||| |||||||| | ||| | || | | | || |||| ||| Sbjct 29769 TAATATATTGAATTTGTTGCAGATAGATTAATATTTGCATTAGGAGCTCCTAAAATTTAT 29828 Query 44486 ATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTT 44545 | | | | || || ||||| | ||||| | || || || |||| ||||| || ||| Sbjct 29829 AATTCAAAGAATCCTTTTGAATGGATGGATATGATATCTTTACAAGGTAAAACTAATTTT 29888 Query 44546 TTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGA-TAACAAGT--GACAAT 44602 || |||| | | |||||||| ||| | | || ||||||| ||| || | || || Sbjct 29889 TTCGAAAGAAGAGTTGGAGATTATTAAAAAGCTGGAGTCATGAGTAAAAAATAGGATAAA 29948 Query 44603 AAATTTACTACGGATGAAGATTTCTAATTAAT 44634 |||||||| ||||| || || | |||||| Sbjct 29949 GTATTTACTATGGATGCTGACTTTTGATTAAT 29980 >seq336 Length=64408 Score = 159 bits (176), Expect = 3e-34 Identities = 417/623 (67%), Gaps = 16/623 (3%) Strand=Plus/Minus Query 40649 TTCAATATTTGGATGTCAA-AAT-AGATACAATTTGAGA-AATCAGTTTCCGTTGCTAAC 40705 ||| |||||||| || || ||| |||| |||||| ||||| ||||| ||| |||| Sbjct 41064 TTCTATATTTGG--GTAAACAATGAGATTTAATTTGGCTGAATCA-TTTCCTTTGTTAAC 41008 Query 40706 TACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTG 40765 ||||| ||| | |||| | ||| | | ||| ||| | || |||||| | | ||| Sbjct 41007 AACAAAGAAAGTATTTTTTAGAGGAGTAGTAGAGGAATTATTGTGGTTTTTAAGAGGAGA 40948 Query 40766 TACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAATGCGCACAGTTCTAA 40825 |||||||| || | | | | || | |||||| | |||||| | | | || ||| Sbjct 40947 TACTAATGGGAAAATACTTTTGGATAAAGGAGTTAAGATTTGGGAAGGTAATGGTACTAG 40888 Query 40826 AACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTA 40885 | ||||||| |||||| || ||| | |||| | ||| |||| | || || || || Sbjct 40887 AGAATATTTGGATAGCATTGGGTTATCAAATAGATAGGAACATGATTTAGGACCAGTCTA 40828 Query 40886 TGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCTGATTATACCAA 40945 ||||| | | | | |||||||||| || ||||| | | || |||||||| || Sbjct 40827 TGGATATTAATGGAGACATTTTGGGGCTGAATATAAGGATTGCTAAAGTGATTATAATAA 40768 Query 40946 TAAAGGAATGGATCAA-TTACAGTGCGTTATAGA--TACGATTAAATCCGATCCCGATAG 41002 | |||| | ||| || ||| || | || || | ||| ||||| |||| ||||| Sbjct 40767 TTAAGGTGTTGATTAAGTTAAAGAG-GTCATTTAATTAC--TTAAAAATAATCCAGATAG 40711 Query 41003 CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACC 41062 || | |||||||| | || ||||| |||| || || | | |||||||| || || Sbjct 40710 TAGAAGGATAATATTATCTGCCTGGAATCCAAGTGATTTAAAATAAATGGCATTACCGCC 40651 Query 41063 TTGTCATTTGTTATGTCAG--TTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTAT 41120 |||||| || |||||| |||| || ||||| || || ||| ||||| Sbjct 40650 ATGTCAT--GTAATGTCATAATTTTTTGTCGCAAATGGGAAATTGAGTTGTATGATGTAT 40593 Query 41121 CAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTC 41180 | |||||| |||| | || | || | || ||||| ||||| |||||||| |||| Sbjct 40592 TAGAGATCATGTGATTTTGGTTTGGGAATTCCATTTAATATAGCTAGTTATGCATTGCTT 40533 Query 41181 ACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGA 41240 || || ||| | || | | ||||| || || ||||||||||| ||||| Sbjct 40532 ACTTAAATGTTGGCTAAGGAATGTAATTTGAATTTGGGAGAATTTGTTCATGTATTAGGG 40473 Query 41241 GATGGACATATTTACATTAATCA 41263 ||| |||||| || | |||||| Sbjct 40472 GATACACATATCTATAGTAATCA 40450 >seq35 Length=366584 Score = 138 bits (152), Expect = 9e-28 Identities = 388/594 (65%), Gaps = 24/594 (4%) Strand=Plus/Minus Query 19335 TAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGC 19394 ||| |||||| ||| | || |||| ||| ||||| || ||| ||||| || ||||| Sbjct 197485 TAAGCATGTTAAAGGATTATTACTTTTTGGTCCACCAGGAACTGGCAAAACTTTGATTGC 197426 Query 19395 GAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAAT 19454 || || | |||| || | | | |||||| |||||||||||||| || || || Sbjct 197425 ACGATAATTGGCTAAAGTATTGAAAGCTAGACCTCCTAAAATTGTAAATGGACCAGAGAT 197366 Query 19455 CTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT-- 19512 || | ||||| ||| || || | ||||||||||| || | |||||||| ||| Sbjct 197365 TTTTAGTAAATTTGTTGGAGAAGCTGAAGAAAATGTTAGAAAACTATTTGCTGATGCTAT 197306 Query 19513 ----GAAGAAGA-ACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAG 19567 || |||| |||||| || ||||| ||| || || || | | | Sbjct 197305 TGCTGATTAAGAGACAAAA-------GGAGATTAAAGTGATTTACATATCATTGTTTTTG 197253 Query 19568 ATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC------TGGTGTAAATGGAGTACATG 19621 ||||| |||| ||||||||||| | ||||| || | || | |||| ||| Sbjct 197252 ATGAAATGGATGCAATCTGTAAATAGAGAGGATCAATTAATTCTGGATCAGGAGCTTATG 197193 Query 19622 ACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTT 19681 | | |||||||||| || | ||||| | | || || || || || |||||||| | Sbjct 197192 ATAATGTTGTCAATTAATTACTGTCTATGATTGATGGAGTCAATTCTCTTAATAATATAT 197133 Query 19682 TAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTC 19741 |||||||||| |||||||||||| || ||||| || || |||| |||| || Sbjct 197132 TAGTTATTGGTATGACTAATAGAAAAGACTTAATTGATGAGGCTGTATTGAGACCAGGAA 197073 Query 19742 GGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAA 19801 | || ||| | | || ||| | ||||| |||||| || | | ||||| | Sbjct 197072 GATTTGAAGTTCATATTGAAGTAGGATTACCTGATGAACAAGGTAGATAATAGATTTTGA 197013 Query 19802 ACATACATACATCAACCATGCGACAAAATAA--CCTTTTAAATGACGATGTAGATCTAGA 19859 | || ||||| || | || | ||||| || || || | |||||| || |||| Sbjct 197012 ATATTCATACTGAAAATCTTAGAAAGAATAATGCCCTT--GATAAAGATGTAAATTTAGA 196955 Query 19860 AGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGT 19913 |||| | || | || ||||| |||| || || ||| |||| | | |||| Sbjct 196954 AGAATTAGCTTCAATCACTAAAAATTATACTGGTGCTGAAATTGAAGCAGTAGT 196901 >seq23 Length=406218 Score = 125 bits (138), Expect = 6e-24 Identities = 316/481 (66%), Gaps = 6/481 (1%) Strand=Plus/Minus Query 19244 TTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTTT 19303 ||||||| || |||||| || | | || ||| | ||||||||| || | | Sbjct 231919 TTGGAGGTTTAGATAAAGAATTAGCAAATATATTTAGAAGAGCATTTTCATCTAGAAGAT 231860 Query 19304 TTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATG 19363 || | || | || || || ||| ||| ||||||||| || || || ||||||| Sbjct 231859 TTCCATAAGCTTTCCTTGAAAAATATGGAATCAAACATGTTAAAGGTCTCTTACTTTATG 231800 Query 19364 GGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAAC 19423 | ||||| || ||| ||||| || ||||| ||| || | |||| || | | Sbjct 231799 GTCCACCAGGAACTGGTAAAACTTTGATTGCAAGATAATTGGCTAAAGTATTGAAGGCTA 231740 Query 19424 AACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAG 19483 |||||| |||||||||||||| || ||||| || | ||||| ||| || || | |||| Sbjct 231739 GACCTCCTAAAATTGTAAATGGACCAGAAATTTTCAGTAAATTTGTTGGAGAAGCTGAAG 231680 Query 19484 AAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAA 19543 ||||||| || | |||||||| ||| | ||| || | ||| ||| Sbjct 231679 AAAATGTTAGAAAACTATTTGCTGATGCTATTGCAGATTAAGAGACAAAAGGTGATTAAA 231620 Query 19544 GTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC-- 19601 || ||| || || || | | |||||| |||| || |||||||| | ||||| || Sbjct 231619 GTGATTTACATATCATTGTTTTTGATGAAATGGATGCTATCTGTAAATAGAGAGGGTCAA 231560 Query 19602 ----TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACG 19657 || | |||| |||| | |||||| |||||| | || || | | || | Sbjct 231559 TTAACTCTGGATCAGGAGCTTATGATAATGTTGTAAATCAATTACTATCTATGATTGATG 231500 Query 19658 GTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAG 19717 | || || || |||| || ||||||||||| |||||||||||| || ||||| | Sbjct 231499 GAGTCAATTCTCTTGATAACATATTAGTTATTGGTATGACTAATAGAAAAGATTTAATTG 231440 Query 19718 A 19718 | Sbjct 231439 A 231439 >seq711 Length=17244 Score = 95.1 bits (104), Expect = 1e-14 Identities = 185/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA-ATGGTGAACTGTC 41107 ||||| || | ||||||||| || | ||||||||| || ||| |||| || |||| Sbjct 9970 ATGGCTTTAGCGCCTTGTCATGCATTGTTTCAGTTTTATGTA-GCAGATGGAAAATTGTC 10028 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 | ||||||||||||||| | ||| | | || ||||| |||||||| ||||| Sbjct 10029 ACTACAATTGTATCAAAGAAGTGCTGATGTATTTTTGGGCGTCCCTTTTAACATTGCGAG 10088 Query 41168 TTATGCTCTGCTCACGTAT-ATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTG 41226 |||||| || | |||| ||| | || || ||| | ||| || || || | || Sbjct 10089 TTATGCATTG-TTGTGTATGATGGTGGCGCAAGTTTGTGAATTAGAAGTAGGAGATTATG 10147 Query 41227 TTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAAC 41286 | || || || ||||||| |||||||||| || || | |||| | ||| | |||| Sbjct 10148 TGCATACTTTTGGAGATGTTCATATTTACAACAACCATTTTGAGCAGGTAAAATTGCAAC 10207 Query 41287 TGACACGAAAACCTAGACCATTTCCAAC 41314 | | || |||| ||| |||| ||||| Sbjct 10208 TTTCTCGGGAACCGAGAGCATTGCCAAC 10235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397444635987730