Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq25 93.3 5e-14 seq379 84.2 3e-11 >seq25 Length=399112 Score = 93.3 bits (102), Expect = 5e-14 Identities = 200/296 (68%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || ||||| ||||||| ||||| | ||||||||| ||| || || ||||| | Sbjct 188699 TGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCAGGCATCAATGAT 188640 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 | || || | |||| | ||||| || ||||| || || ||||| || || || ||| | Sbjct 188639 CTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAAATGCCTTCAACAGAA 188580 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCC 122850 ||||| |||| | | ||| || || || | || || || ||||||||||||| Sbjct 188579 GCAAAGGCAATTAATCTTTCAGCAAATGAATCATTATT---ATTAATCCATTTCATTGCC 188523 Query 122851 CATTTCGCCTTCTTCTCAA-TACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTT 122909 || | || ||||| | || |||| || ||| | | || || | | | | || || Sbjct 188522 CACATTGCTTTCTTTTAAATTACA-GGCACATTATCTATAGCATGGAGAAGATAGTTTTT 188464 Query 122910 TTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAA 122965 |||| | |||| | || || | |||||||| |||||||||||| ||||| Sbjct 188463 TTCATTTTCATCAGTTATATAGGTATCAATCAAAAGTGAATATGTTTCAGAATGAA 188408 >seq379 Length=55362 Score = 84.2 bits (92), Expect = 3e-11 Identities = 267/410 (65%), Gaps = 13/410 (3%) Strand=Plus/Plus Query 110974 ATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTA 111033 ||| || |||||||| || |||||||| || ||| || ||||||||||||| ||| Sbjct 4321 ATAGATAGTTTCAAAAATCTTAGCATTCAATTCTAAGGCATCTTCTGAATCAAATG-GTA 4379 Query 111034 GCGGCACAAAATA-AATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTC 111092 || || ||| |||| || | ||||| || || | ||||||||||| |||| Sbjct 4380 TTTTCATTCTTTATAATGCATCTGCAAAACCTTAGACTCCTATTCCAATAGGTCTATGTC 4439 Query 111093 GCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTA 111152 ||||| | | || | ||| |||||||| || ||||| ||| || | Sbjct 4440 TTTTATTACTGTATTCTGCTTATTTAACTGGATAAAAGTTCAAATCAATTACTATATTAA 4499 Query 111153 GATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCT 111212 ||||| | || | | || || || || | || ||| |||||||||| | | Sbjct 4500 GATTTGTCGTGATTAATTTAGTAATCTCCAACAATTAATCAAAATCAAAAGT---TTTAT 4556 Query 111213 CTTCATTGACATACTTTGGAAGGGCGATTGAT----GCCAAATTGCAAACAGCCGTCTCA 111268 |||| |||| ||||| | ||| || || | ||| |||||||| | ||| Sbjct 4557 CTTCTTTGATTAACTTTTATA----AATTAATACTAGCAAGATTACAAACAGCAATTTCA 4612 Query 111269 TCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAA 111328 || ||| | | | |||||| ||||||| || ||| || || || || | | Sbjct 4613 TCTGGTGATGTAAATTAGATAATTTCAGTACATAGATTACTACTTTTTATTGTACCTAGA 4672 Query 111329 TTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 111378 |||||||| ||||| |||| ||||| ||||| || || | ||| || || Sbjct 4673 TTCTTTTGATTACTTTTCTAATTGCAAGCATCTTTATATAACATATATGG 4722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628013582961600