Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq97 194 8e-45 seq7 188 3e-43 seq15 165 4e-36 >seq97 Length=182329 Score = 194 bits (214), Expect = 8e-45 Identities = 411/602 (68%), Gaps = 16/602 (3%) Strand=Plus/Minus Query 64892 CCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAG 64951 ||||| |||||||| | | ||||||| |||| |||| ||||| || || |||| | Sbjct 164991 CCTGTACCAATACCTTCAGCTCCATTTACTAAACTCATTGGAATTATAGGAACATAGTAT 164932 Query 64952 ATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAAAATGGCATCATCCTCTTTT 65011 ||| ||||| || |||||||| || | ||| || | | | |||||| | || | Sbjct 164931 TCAGGTTCAACCATTTCTCCATCATCCTCTATATAATTTACTACGTGATCATCTTATTCT 164872 Query 65012 GGAAATATAGAACGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGTGG 65071 || || ||| | | || |||||||| || ||| ||||||||||| | || || || Sbjct 164871 GGGAAAATATATCTTGTAATTTTATTTAAGACAGTTGAAATATATCTTGCAGAAGCATGA 164812 Query 65072 TCTT---GTCCAGTTCGTCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTG 65128 || | ||| | || | ||||| ||||| |||||| ||| | ||| |||||| Sbjct 164811 TCCTTACCTCCCATAGCTCTACTACCAAATTGACCTCTTGGCAATAAAAGATTTATATTG 164752 Query 65129 TTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCG 65188 |||||||||| ||| || | ||||| || ||||| | | ||| ||||| Sbjct 164751 TTTGAACCAACAAAGTTTTATGCCATCCCTATAATAGTAGTTACCAAAGATATATCACCA 164692 Query 65189 TGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTT 65248 ||||||||| |||||||||| | || |||||| | |||| | ||||||| ||||| | Sbjct 164691 TGATGATATGCTGAATGTTCTGCGATATATCCTCCCAATTAAACAACTTTAATTTCTTAT 164632 Query 65249 GTTA-AATTCTTTTTAA--ATGCAGAATACAATATTTTCCGTAAACTAATTTTCAATCCA 65305 ||| | |||| || || ||||| |||| | ||||| || || |||| | |||| Sbjct 164631 TTTAGATTTCTCTTGAAACATGCA-AATA-AGACTTTTCTTTAGCCTGGTTTT-AGTCCA 164575 Query 65306 TCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGTATGAATTCTTTG 65365 |||||||| ||| || ||| | ||| |||| ||||| || |||||||| Sbjct 164574 TCCATTAATGAAGGTATAGATCTAATATTATCTGCCATTGAAAAATGAATCAATTCTTTA 164515 Query 65366 TTAATAAATTCTTCATATGAAACACTCGTATTATCTGTATTCAA-ATAACTATCGCGATT 65424 | ||||| |||| |||| | | || | | | ||| |||| ||| ||| |||| Sbjct 164514 TGTATAAAATCTTAATATCCTA-ATTCTTTCTGTGTGTGATCAACATATAAATCATGATT 164456 Query 65425 ATATTTTTCTAACCATTCTTTTCTATCACTTGAGC---GTTTTTATTAAATATTAAATCA 65481 ||| | | | ||||||| ||||||||| | ||| || |||||||| ||||||| Sbjct 164455 ATACTGTGCCAACCATTACTTTCTATCA--TTAGCTTTCTTCTTATTAAAACATAAATCA 164398 Query 65482 AT 65483 || Sbjct 164397 AT 164396 >seq7 Length=634827 Score = 188 bits (208), Expect = 3e-43 Identities = 413/604 (68%), Gaps = 20/604 (3%) Strand=Plus/Minus Query 64892 CCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAG 64951 || || || ||||| | | ||||| | ||| |||| ||||| || || ||||| | Sbjct 36955 CCAGTACCTATACCTTCAGCTCCATTAACCAAACTCATAGGAATGATAGGAACATAATAT 36896 Query 64952 ATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAA--AATGGCATCATCCTCTT 65009 || ||||| || |||||||| ||| ||||||| || |||| |||||||| | Sbjct 36895 TCTGGTTCAACCATTTATCCATCATCTTCCTAATACTTTAATAAATG--ATCATCCTGCT 36838 Query 65010 TTGGAAATATAGAACGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGT 65069 || |||||| | | ||| |||||||| | ||| | ||||||||| | ||||| | Sbjct 36837 CAGGGAATATATACCTAGTAATTTTATTAAGAGCTGTAGATATATATCTTGCAGATGCAT 36778 Query 65070 GGTCTTGTCCAGT--TCG-TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATAT 65126 | || | ||| | | || | ||||||| ||| ||||| | |||||||||||||| Sbjct 36777 GATCCTTACCACCCATAGCTCTACTACCAAACTAACCTTTTGGTAATAATAAATTAATAT 36718 Query 65127 TGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCAC 65186 | || ||||||| |||||| | |||||| || ||||||| | | || || | Sbjct 36717 TATTAGAACCAACAAAATTTTAAGCCATCCCTATAATTGTAGAAACCAATGATATGTCTC 36658 Query 65187 CGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCG 65246 | |||||||| | |||||||||| | ||| |||| |||| | | ||||| ||||| Sbjct 36657 CATGATGATAAGCAGAATGTTCAGCTATATAACCACCCAATTAAACTACTTTAATTTC-- 36600 Query 65247 TTGTT--AAATTCTTTTTAA---ATGCAGAATACAATATTTTCCGTAAACTAATTTTCAA 65301 ||||| ||||| | |||| ||||| |||| | ||||| ||| || ||| || Sbjct 36599 TTGTTTCAAATTTCTCTTAAAACATGCA-AATA-ACACTTTTCTCTAACCTGGCTTT-AA 36543 Query 65302 TCCATCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGTATGAATTC 65361 |||||||| | |||||| ||| | |||| |||| ||||| || || || Sbjct 36542 CCCATCCATAAGGGAAGGAATAGATCTAATATTATCAGCCATTGAAAAATGAATCAACTC 36483 Query 65362 TTTGTTAATAAATTCTTCATAT-GAAACACTCGTATTATCTGTATTCAAATAACTATCGC 65420 ||| | ||||||||| |||| || | | | || | || || || ||| ||| Sbjct 36482 TTTATGTATAAATTCTGAATATCCTAATTCACTTTTTGTATG-ATCCACATATAAATCAT 36424 Query 65421 GATTATATTTTTCTAACCATTCTTTTCTATCACTTG-AGCGTTTTTATTAAATATTAAAT 65479 || |||| | ||||||||| ||||| |||| ||| ||||||||||| ||||| Sbjct 36423 TGTTGTATTATGCTAACCATTATTTTCGATCATTTGCTTTTTTTTTATTAAAGCATAAAT 36364 Query 65480 CAAT 65483 |||| Sbjct 36363 CAAT 36360 >seq15 Length=494447 Score = 165 bits (182), Expect = 4e-36 Identities = 409/605 (68%), Gaps = 22/605 (4%) Strand=Plus/Minus Query 64892 CCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAG 64951 || || || ||||| | | ||||| | |||| |||| ||||| || || ||||| | Sbjct 63147 CCAGTACCTATACCTTCAGCTCCATTAACTAAACTCATAGGAATGATAGGAACATAATAT 63088 Query 64952 ATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAA--AATGGCATCATCCTCTT 65009 || ||||| || |||||||| || ||||||| || |||| |||||| | || Sbjct 63087 TCTGGTTCAACCATTTATCCATCATCTTCTTAATACTTTAATAAATG--ATCATCTTATT 63030 Query 65010 TTGGAAATATAGAACGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGT 65069 || |||||| | | || |||||||| | ||| ||||||||||| | ||||| | Sbjct 63029 CAGGGAATATATACCTTGTAATTTTATTTAGAGCTGTAGAAATATATCTTGCAGATGCAT 62970 Query 65070 GGTCTTGTCCAGT--TCG-TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATAT 65126 | || | ||| | | || | ||||||| ||| ||||| | |||||||||||||| Sbjct 62969 GATCCTTGCCACCCATAGCTCTACTACCAAACTAACCTTTTGGTAATAATAAATTAATAT 62910 Query 65127 TGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCT-TCA 65185 | || ||||||| |||||| | |||||| || ||||| | | || || | || Sbjct 62909 TATTAGAACCAACAAAATTTTAAGCCATCCCTATAATCG-TAGATACCAATGATATATCT 62851 Query 65186 CCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCC 65245 || |||||||| | || ||||||| | ||| || | |||| | ||||| ||||| Sbjct 62850 CCATGATGATAAGCAGAGTGTTCAGCTATATAACCCCCCAATTAGACTACTTTAATTTCT 62791 Query 65246 GTTGTTAAATTCTTTTTAA---ATGCAGAATACAATATTTTCCGTAAACTAATTTTCAAT 65302 | | ||||| |||||| |||| ||||| | ||||| ||| || |||| || Sbjct 62790 TATTTCAAATTTCTTTTAAAACATGC-GAATAGCA-CTTTTCTCTAACCTGGTTTT-AAA 62734 Query 65303 CCATCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGTATGAATTCT 65362 |||||||| | |||||| ||| | ||| | || ||||| || || ||| Sbjct 62733 CCATCCATAAGGGAAGGAATAGATCTAATATTATCTGCCATAGAAAAATGAATCAACTCT 62674 Query 65363 TTGTTAATAAATTCTTCATA---TGAAACACTCGTATTATCTGTATTCAAATAACTATCG 65419 || | || |||||| ||| | | |||| | || | || || || ||| ||| Sbjct 62673 TTATGTATGAATTCTGAATAGCCTAATTCACT--TTTTGTATG-ATCCACATATAAATCA 62617 Query 65420 CGATTATATTTTTCTAACCATTCTTTTCTATCACTTGAGCGTTT-TTATTAAATATTAAA 65478 |||||||| ||||||||| |||||||||| ||| ||| |||||||| ||| Sbjct 62616 TTATTATATTAAGCTAACCATTATTTTCTATCATTTGCTTTTTTCTTATTAAAGCACAAA 62557 Query 65479 TCAAT 65483 ||||| Sbjct 62556 TCAAT 62552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235673261466900