Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq11 102 1e-16 seq563 89.7 6e-13 >seq11 Length=551047 Score = 102 bits (112), Expect = 1e-16 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 89181 ACATGGAAAGAATTATTCGATCCTGTCTTGCATATAGAACTTAGGAGGTGGGCTGATATA 89240 ||||||||| || | ||||| || |||||||||||| | || | ||||| ||| | Sbjct 285681 ACATGGAAATAAAGAAATGATCCAGTATTGCATATAGAATTAAGAAAATGGGCAGAT-TG 285623 Query 89241 TTTATT-ATCGCGCCACTAACGGCTAATACTCTAGCGAAGATAGCTAATGGTATATGCGA 89299 ||| || || || || || | || |||||| | || ||||| |||||||| |||| || Sbjct 285622 TTTGTTAATTGCTCCTCTTTCAGCGAATACTATGGCTAAGATTTCTAATGGTTTATGTGA 285563 Query 89300 CAACTTACTAACTTCTATAGTTAGGGCATGGGATATATCA-AAGCCCCTTATTTTTTGTC 89358 || ||| |||| | | | ||| ||||||||| || | || || | || || || Sbjct 285562 TAATTTATTAACAAATGTTGCTAGAGCATGGGAT-TACAATAAACCAATGATATTAGCTC 285504 Query 89359 CTGCCATGAATACTCTAATGTGGGAACATCCTATTACTGAATCACAAAT 89407 |||| ||||||||| | |||| || |||| || ||| || |||||| Sbjct 285503 CTGCAATGAATACTATGATGTATGAGAATCCAATCACTAAAAAACAAAT 285455 >seq563 Length=30168 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 22664 TTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTACGTAAAATACATCCTTA---CT 22720 ||||| || | ||| || | |||||| || | |||||| | || ||| ||| | Sbjct 612 TTCAATAATCATTTGAGCAATTCTATCTCCATAATTTACTTTGAA---ATCGTTATCTCC 668 Query 22721 AAAATTAAATAACAATATACCTATATTTCCCCTGTAATCTCTATCTATCACACCCGCGCC 22780 |||||||||||| || | || ||| | ||| ||||||||| ||| || ||||| || || Sbjct 669 AAAATTAAATAATAAAACACATATTTCTCCTCTGTAATCTTCATCAATAACACCAGCACC 728 Query 22781 TACATCGATAAAATGATTACATGCCAATCCCGATCTAGGAG 22821 ||||| ||||||| ||| ||| ||||| || | ||||| Sbjct 729 AACATCTATAAAATTTTTAGCTGCTAATCCAGAACGAGGAG 769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603163111723040