Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq114 107 1e-18 seq56 89.7 3e-13 >seq114 Length=165420 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || ||||||||||| ||||||| |||||||||||||||| Sbjct 163562 CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAA 163621 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| | || || || ||||| || | | | || || || || Sbjct 163622 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 163681 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| | | ||| | || || | ||| |||||| || || Sbjct 163682 ATTCCTTCCTTGTCT-TAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAAC 163740 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || |||||||||||||| ||||| |||||||| ||||| Sbjct 163741 ATCAAGAGTGATGGTTTTACCGGTTAATGTTTTAACAAAAATTTGCAT 163788 Score = 98.7 bits (108), Expect = 6e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || || |||||||| ||||||| |||||||||||||||| Sbjct 141191 CCACCTCTTAATCTCAAGACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAA 141132 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| | || || || ||||| || | | | || || || || Sbjct 141131 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGA 141072 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| | | ||| | || || | ||| |||||| || || Sbjct 141071 ATTCCTTCCTTGTCT-TAAATTTTAGCCTTGACAGCATCAATAGTGTCTGATGGTTCAAC 141013 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | || || |||||||| ||||| ||||| |||||||| ||||| || Sbjct 141012 ATCAAGAGTGATTGTTTTACCTGTTAATGTTTTAACAAAAATTTGCATATT 140962 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || ||||||||||| ||||||| |||||||||||||||| Sbjct 144111 CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAA 144052 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| | || || || ||||| || | | | || || | || Sbjct 144051 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAAGTGGG 143992 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| | | ||||| | || | | ||| |||||| || || Sbjct 143991 ATTCCTTCCTTGTCT-TAAATTTTTGCCTCGACAGCTTCAATAGTGTCTGATGGTTCAAC 143933 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || |||||||| ||||| ||||| |||||||| | ||| Sbjct 143932 ATCAAGAGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTTCAT 143885 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || ||||||||||| ||||||| |||||||||||||||| Sbjct 164283 CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAA 164342 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| | || ||| || ||||| || | | | || || || || Sbjct 164343 AGTGTTCTTCCATCTTCTAATTATTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 164402 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| | | ||| | || || | ||| |||||| || || Sbjct 164403 ATTCCTTCCTTGTCT-TAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAAC 164461 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || || ||||| ||||| ||||| || | ||| Sbjct 164462 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 164509 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || ||||||||||| ||||||| ||| |||||||||||| Sbjct 153364 CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATATTATAATCTGAA 153305 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| | || || || ||||| || | | | || || || || Sbjct 153304 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGA 153245 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT--TCGCTCTCC 34656 | ||| || |||||| | | ||| | || || | || |||||| | | ||| Sbjct 153244 ATTCCTTCTTTGTCT-TAAATTTTAGCCTTGACAGCATCTATAGTGTCTGATGGTTCT-- 153188 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || |||||||| ||||| ||||| |||||||| | ||| Sbjct 153187 ACATCAAGAGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTACAT 153138 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || ||||||||||| ||||||| ||| |||||||||||| Sbjct 139733 CCACCTCTTAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTAAATATTATAATCTGAA 139674 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| | || || || ||||| || | | | || || || || Sbjct 139673 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 139614 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| ||| | | ||| | || || | ||| |||||| || || Sbjct 139613 ATTCCTTCCTTATCT-TAAATTTTAGCCTTGACAGCGTCAATGGTGTCTGATGGTTCAAC 139555 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | || || || || || ||||| ||||| |||||||| ||||| || Sbjct 139554 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTAACAAAAATTTGCATATT 139504 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| | | ||| || || |||||||| ||||||| ||||||||||||||| Sbjct 165079 GCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAATCTGA 165138 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 |||||||| | ||||| | || ||| || ||||| || | | | || || || || Sbjct 165139 AAGTGTTCTTCCATCTTCTAATTATTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 165198 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCA 34657 | ||| ||||||||| | | ||| | || || | ||| |||||| || | Sbjct 165199 GATTCCTTCCTTGTCT-TAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAA 165257 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || || || ||||| ||||| ||||| || | ||| Sbjct 165258 CATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 165306 >seq56 Length=265680 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || ||||| ||||| || |||| |||||||||||||||| Sbjct 113496 CCTCCTCTTAATCTCAATACTAAATGAAGAGTTGATTCTTTTTAAATGTTATAATCTGAA 113437 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||||||||| || || ||||| || || | | ||| || || || Sbjct 113436 AGAGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGAGGA 113377 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || || ||| ||| || | ||||| | ||| |||||| || || Sbjct 113376 ATTCCTTCTTTATCTTAAATC-TTAGCCTTAACAGCATCAATGGTGTCTGAAGGTTCTAC 113318 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || || || || ||||| |||||||| | ||| Sbjct 113317 ATCAAGTGTGATAGTCTTTCCCGTCAAGGTTTTAACAAAAATTTACAT 113270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314720601290618