Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq114 122 8e-23 seq454 118 9e-22 seq337 109 5e-19 seq287 109 5e-19 >seq114 Length=165420 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | |||||||||||||| | || || ||| |||| |||||||| || ||||| || Sbjct 164509 ATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATCACTCTTGATGTTGAACCATCA 164450 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| ||||| |||||| ||||||| ||||| || ||||| ||| || Sbjct 164449 GACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 164390 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || ||| |||| ||||| | || |||| ||||| ||| Sbjct 164389 TAAAGACTCATTTTTGCAGGAAAATAATTAGAAGATGGAAGAACACTTTCAGATTATAAC 164330 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||| || || | ||||| |||||| | || | ||||| || Sbjct 164329 ATTTAAAAGGAATCAACTCTCCATTTAGTTTTGAGATTAAGAGGTGGAAT 164280 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | |||||||||||||| | || || ||| |||| |||||||| || ||||| || Sbjct 165306 ATGTAAATATTTGTAAAAACATTAACTGGAAAGACTATCACTCTTGATGTTGAACCATCA 165247 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| ||||| |||||| ||||||| ||||| || ||||| ||| || Sbjct 165246 GACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 165187 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || ||| |||| ||||| | || |||| ||||| ||| Sbjct 165186 TAAAGACTCATTTTTGCAGGAAAATAATTAGAAGATGGAAGAACACTTTCAGATTATAAC 165127 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| ||||||| || || | || || || ||| | ||| | |||||| Sbjct 165126 ATTTAAAAGGAATCAACTCTCCACTTAGTCTTGAGATTGAGAGGTGGC 165079 Score = 98.7 bits (108), Expect = 9e-16 Identities = 172/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 26973 TTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTT 27032 ||| ||||| | | ||| | || ||||| ||||| | || || || | || |||||| Sbjct 153124 TTTTATTTAAAA-CTATGTAAATTTTTGTTAAAACATTAACTGGTAAAACCATCACTCTT 153182 Query 27033 GAAGTGGAACCGTCCGACTCGATTGAGATG--GTCAAACAAAAAATTCAAGACAAAGAAG 27090 || || ||||| || ||| | || ||||| ||||| |||||| |||||||||||| Sbjct 153183 GATGTAGAACCATCAGACACTAT--AGATGCTGTCAAGGCTAAAATTTAAGACAAAGAAG 153240 Query 27091 GCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGA 27150 | || ||||| ||| || | | | || | || || || |||| ||||| | | Sbjct 153241 GAATTCCACCTGATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAA 153300 Query 27151 CCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGG 27210 | |||| ||||| || ||| ||||||| || || | ||||| |||||| | || | | Sbjct 153301 CACTTTCAGATTATAATATTTAAAAGGAATCAACTCTCCATTTAGTTTTGAGATTAAGAG 153360 Query 27211 GTGGCAT 27217 |||| || Sbjct 153361 GTGGAAT 153367 >seq454 Length=44262 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || ||||| || || || || || || ||||||||||||| || ||||| || Sbjct 41492 ATGTAAATCTTTGTCAAGACACTCACAGGAAAAACTATTACTCTTGATGTTGAACCATCT 41433 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| |||||| ||||| ||||||| ||||| || ||||||||| || Sbjct 41432 GACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAGGAAGGAATCCCACCCGATTAA 41373 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | ||| || ||| |||| ||||| || || |||| ||||| ||| Sbjct 41372 TAAAGACTTATCTTCGCTGGAAAATAATTAGAAGATGGTAGAACACTTTCAGATTATAAC 41313 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||| || || | || || |||||| | ||| | || || || Sbjct 41312 ATCTAAAAGGAATCAACACTTCACTTAGTTTTGAGATTGAGAGGAGGAAT 41263 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || ||||| || || || || ||| | ||||||||||| || ||||| || Sbjct 41720 ATGTAAATTTTCGTAAAGACACTCACAGGAAAGACAATTACTCTTGATGTTGAACCATCT 41661 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| |||||| ||||| ||||||| ||||| || ||||||||| || Sbjct 41660 GACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAGGAAGGAATCCCACCCGATTAA 41601 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || ||| |||| |||||| | || |||| || || ||| Sbjct 41600 CAAAGACTTATCTTTGCAGGAAAATAATTAGAAGACGGAAGAACACTTTCAGACTATAAC 41541 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||| ||||||| || || | || || |||||| Sbjct 41540 ATTTAAAAGGAATCAACACTTCACTTAGTTTTG 41508 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || ||||| || || || || || ||| | ||||||||||| || ||||| || Sbjct 41264 ATGTAAATCTTTGTCAAGACACTCACAGGAAAGACAATTACTCTTGATGTTGAACCATCT 41205 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| |||||| ||||| ||||||| ||||| || ||||||||| || Sbjct 41204 GACACAATTGATGCTGTCAAAGCCAAAATCTAAGACAAGGAAGGAATCCCACCCGATTAA 41145 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || ||| |||| |||||| | || |||| || || ||| Sbjct 41144 TAAAGACTTATCTTTGCAGGAAAATAATTAGAAGACGGAAGAACACTTTCAGACTATAAC 41085 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||| ||||||| || || | || || |||||| Sbjct 41084 ATTTAAAAGGAATCAACACTTCACTTAGTTTTG 41052 >seq337 Length=64228 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | |||||||| ||||| || || || || ||||||||||||| || ||||| || Sbjct 61313 ATGTAAATATTTGTTAAAACACTAACAGGAAAAACTATTACTCTTGATGTTGAACCATCA 61372 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| ||||| |||||| ||||||| ||||| || ||||| ||| || Sbjct 61373 GACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 61432 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || |||| ||||| | || |||| || || ||| Sbjct 61433 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 61492 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||| || || | || || || ||| | ||| | ||||| || Sbjct 61493 ATTTAAAAGGAATCAACTCTCCACTTAGTGTTGAGATTGAGAGGTGGAAT 61542 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | |||||||| ||||| || || || || ||||||||||||| || ||||| || Sbjct 63085 ATGTAAATATTTGTTAAAACACTAACAGGAAAAACTATTACTCTTGATGTTGAACCATCA 63144 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| ||||| |||||| ||||||| ||||| || ||||| ||| || Sbjct 63145 GACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 63204 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || |||| ||||| | || |||| || || ||| Sbjct 63205 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 63264 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||| || || | || || || ||| | ||| | ||||| || Sbjct 63265 ATTTAAAAGGAATCAACTCTCCACTTAGTGTTGAGATTGAGAGGTGGAAT 63314 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | |||||||| ||||| || || || || ||||||||||||| || ||||| || Sbjct 62314 ATGTAAATATTTGTTAAAACACTAACAGGAAAAACTATTACTCTTGATGTTGAACCATCA 62373 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| ||||| |||||| ||||||| ||||| || ||||| ||| || Sbjct 62374 GACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 62433 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || |||| ||||| | || |||| || || ||| Sbjct 62434 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 62493 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| ||||||| || || | || || || ||| | || | |||||| Sbjct 62494 ATTTAAAAGGAATCAACTCTTCACTTAGTGTTGAGATTAAGAGGTGGC 62541 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | |||||||| ||||| || || || || ||||||||||||| || ||||| || Sbjct 64085 ATGTAAATATTTGTTAAAACACTAACAGGAAAAACTATTACTCTTGATGTTGAACCATCA 64144 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| ||||| |||||| ||||||| ||||| || ||||| ||| || Sbjct 64145 GACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 64204 >seq287 Length=75303 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | |||||||| ||||| || || || || ||||||||||||| || ||||| || Sbjct 529 ATGTAAATATTTGTTAAAACACTAACAGGAAAAACTATTACTCTTGATGTTGAACCATCA 588 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| ||||| |||||| ||||||| ||||| || ||||| ||| || Sbjct 589 GACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 648 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || |||| ||||| | || |||| || || ||| Sbjct 649 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 708 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||| || || | || || || ||| | ||| | ||||| || Sbjct 709 ATTTAAAAGGAATCAACTCTCCACTTAGTGTTGAGATTGAGAGGTGGAAT 758 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | |||||||| ||||| || || || || ||||||||||||| || ||||| || Sbjct 2540 ATGTAAATATTTGTTAAAACACTAACAGGAAAAACTATTACTCTTGATGTTGAACCATCA 2599 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| ||||| |||||| ||||||| ||||| || ||||| ||| || Sbjct 2600 GACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 2659 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || |||| ||||| | || |||| || || ||| Sbjct 2660 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 2719 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||| || || | || || || ||| | ||| | ||||| || Sbjct 2720 ATTTAAAAGGAATCAACTCTCCACTTAGTGTTGAGATTGAGAGGTGGAAT 2769 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 26994 ATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCG 27053 |||||||| ||||| || || || || ||||||||||||| || ||||| || ||| | Sbjct 1541 ATATTTGTTAAAACACTAACAGGAAAAACTATTACTCTTGATGTTGAACCATCAGACACT 1600 Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113 ||||| ||||| |||||| ||||||| ||||| || ||||| ||| || | | Sbjct 1601 ATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAATAAAGA 1660 Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173 | || | || || || |||| ||||| | || |||| || || |||||| || Sbjct 1661 CTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAACATTTAA 1720 Query 27174 AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || | || || || ||| | ||| | ||||| || Sbjct 1721 AAGGAATCAACTCTCCACTTAGTGTTGAGATTGAGAGGTGGAAT 1764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434905646017920