Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq1056 152 2e-32 >seq1056 Length=3914 Score = 152 bits (168), Expect = 2e-32 Identities = 243/346 (70%), Gaps = 2/346 (1%) Strand=Plus/Minus Query 40075 GCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTC 40134 ||||||||||| | || ||||| |||||| || || | ||| || || || || | Sbjct 2357 GCGCGCCTTGAGCTTACCAAAGGTGATGATCTGCGCCACATGGTCCGCGCCATATTTG-C 2299 Query 40135 GGTG-ACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAGTCGATGTCAACGTCGG 40193 | || || || ||||| ||||||||||| ||| || ||||||||||| | ||||| Sbjct 2298 GCTGGACATAGCGGATCACCTCGCCGCGCCGCGTTTCGCAAAAGTCGATGTCGAAGTCGG 2239 Query 40194 GCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGAT 40253 |||| ||||| || |||||||| ||||| || || || | || || || ||| |||| Sbjct 2238 GCATCGACACACGTTCGGGGTTGAGGAAACGTTCAAACAGCAGACCCAGCCGCAGCGGAT 2179 Query 40254 CGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAG 40313 | ||||||||||| || | || || || || || ||||||| ||||| | Sbjct 2178 CAAGGTCGGTGATGGTCAGCGCCCATGCCACAAGGCTGCCCGCACCCGAGCCGCGCCCCG 2119 Query 40314 GACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGT 40373 | || || | | | |||| ||||||||| ||| |||||||| |||| |||||||| Sbjct 2118 GCCCCACGGGAATGTCATTCTGCTTGGCCCATTGGATAAAGTCGGCCACGATCAGGAAGT 2059 Query 40374 AGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAG 40419 || | || ||||| || |||| ||| | ||||| | | ||| Sbjct 2058 AGCCGGCAAAACCCATGCGGTTGATGATGCCCGTCTCGAAATCGAG 2013 Score = 87.8 bits (96), Expect = 6e-13 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 39232 CTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGAT 39291 ||| |||||||| || || ||||| |||||||| | |||||| |||||| || ||||| Sbjct 3155 CTTTTTGCCCATCGCGCGGCGCAGAAGGTCGGCATCGCCCAGCGAGTAGCCGGCAAGGAT 3096 Query 39292 CTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGT 39339 |||||| |||| | |||||| ||||| || | || | |||||| || Sbjct 3095 CTGCGCGGCCTGCATCACCTGTTCCTGATAAACGAAAATCCCGTAGGT 3048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160401931278204