Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq1056 120 1e-22 >seq1056 Length=3914 Score = 120 bits (132), Expect = 1e-22 Identities = 241/349 (69%), Gaps = 10/349 (3%) Strand=Plus/Minus Query 38982 GCGCGCCTTGATCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTC 39041 ||||||||||| | || | || |||||| || || | ||| ||| || || | Sbjct 2357 GCGCGCCTTGAGCTTACCAAAGGTGATGATCTGCGCCACATGGTCCGCGCCATATTTG-C 2299 Query 39042 GGTG-ACGTACCGGATCACGTCGCCACGGCGACGGTCATCG---AAGTCGATGTCCACGT 39097 | || || || |||||||| ||||| || || || | ||| ||||||||||| | || Sbjct 2298 GCTGGACATAGCGGATCACCTCGCCGCGCCG-CGTT--TCGCAAAAGTCGATGTCGAAGT 2242 Query 39098 CGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGG 39157 ||||||| || ||||| || ||||| ||||| || || || | || || | | | | Sbjct 2241 CGGGCATCGACACACGTTCGGGGTTGAGGAAACGTTCAAACAGCAGACCCAGCCGCAGCG 2182 Query 39158 GGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCC 39217 | || ||||||||||| || || | || | || ||| || | |||||||||| Sbjct 2181 GATCAAGGTCGGTGATGGTCAGCGCCCATGCCACAAGGCTGCCCGCACCCGAGCCGCGCC 2122 Query 39218 CAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGA 39277 | || || || | | | |||| ||| ||||| ||| |||||||| |||| |||| Sbjct 2121 CCGGCCCCACGGGAATGTCATTCTGCTTGGCCCATTGGATAAAGTCGGCCACGATCAGGA 2062 Query 39278 AGTACGACGG-GAACCCCATCTGGTTGATCATGTCGATCTCGTACTCGA 39325 |||| | ||| || ||||| ||||||| ||| | ||||| | |||| Sbjct 2061 AGTA-GCCGGCAAAACCCATGCGGTTGATGATGCCCGTCTCGAAATCGA 2014 Score = 82.4 bits (90), Expect = 2e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 38139 CTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGAT 38198 ||| |||||||| ||||| || || |||||||| | || || | ||| ||||| ||||| Sbjct 3155 CTTTTTGCCCATCGCGCGGCGCAGAAGGTCGGCATCGCCCAGCGAGTAGCCGGCAAGGAT 3096 Query 38199 CTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGT 38246 |||||| |||| | |||||| ||||| || | || | |||| |||| Sbjct 3095 CTGCGCGGCCTGCATCACCTGTTCCTGATAAACGAAAATCCCGTAGGT 3048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159710750534172