Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq1730 96.9 7e-16 >seq1730 Length=1430 Score = 96.9 bits (106), Expect = 7e-16 Identities = 527/820 (64%), Gaps = 41/820 (5%) Strand=Plus/Plus Query 17390 GTAGTAGATGGACAGGTTTTCCAGCTTCGTGATGAGCATCGCATCCGCCGGGAAGTACGG 17449 |||||| | |||||||| ||| |||||||| | | | |||||||||||| || Sbjct 263 GTAGTATTTCGACAGGTTCGAATACTTGGTGATGAGGAAGGACTTCGCCGGGAAGTAGGG 322 Query 17450 GACGCGTACCGCTGGCAGGTTGCCGA--TGCGTTTCTGGCTGATGATGACGTCAGCGGCC 17507 |||||| || | |||||| ||| | || | || | | ||||| | | | ||| Sbjct 323 GACGCGCTCCACCGGCAGGCCGCCCAGCTGAATGTCGGCC--ATGATTGCCTGACGCGCC 380 Query 17508 AGCATTTCGCTGTTGTCCT-GCTCCTTGTTGACGATGGGAAAATACTTGTCCGCCAGTAG 17566 | ||||||| | || | | | | | ||||| || || ||||||||||| || || Sbjct 381 ATCATTTCGAGGCTGCCTTCGGTGCG-GTTGATGAGCGGGAAATACTTGTCATGCACCAG 439 Query 17567 CTGACGTCCCACAATCACCACAAGGTCAGGGTCTTCCTGATACCA--CGGCTCAATCAGG 17624 || || ||||| ||||| |||||||| || |||||||| ||| ||| || || Sbjct 440 CTTGCGGCCCACGATCACGACAAGGTCGGGATCTTCCTGCACCCATTCGG--GCATGAGC 497 Query 17625 TTGTTGGTCGCATCCATCACCAGTGCATCAAGGCTGGCATAATCACCGCCCTTACCCACG 17684 | | || ||| |||||| | || || ||| |||| | ||||| || || Sbjct 498 GATTCCTTGGCGTCCCACACCAGAGAGTCGAGACTGTCATAGT---CGCCC---GCCGCG 551 Query 17685 C---GGATGACCTCAGAGGTG-GTGTGCCCTTCCTCGTCAGTGACCTTGCTCATCACGCG 17740 | | |||||| || || |||| | || | ||||| ||| | || Sbjct 552 CCATAGGTGACCT------TGCCCGTCACCTTGC-CGCCCTCGACCTCATCCATGAGCCG 604 Query 17741 CGCCGGGGCTTCATTGCGGTATTTCTGCAGCCAGC--CGACCGCCACATCCTGCAGCATC 17798 | |||||||| | |||| ||| ||||||| ||| | | |||||| |||| | Sbjct 605 TTCGGGGGCTTCGTCGCGGATCGCCTGAAGCCAGCCACGATTG--AAATCCTGAAGCAGC 662 Query 17799 GGATTGCTGCTGCGGTCAGAGGTTTCGGCACGCCTCACGCCGTTAAAACCGGCCATGATT 17858 |||||| | |||||| | ||| | |||| ||| || || || | || Sbjct 663 GGATTGGCGGTGCGGTTGGTGGTCTTGGCATAGTGGGTGCCATTGAAGCCCACGCAAATG 722 Query 17859 AAATCAAGGGACTGGCGTTTGATAATGGCGTTACGGACACGGAGCTGGAAATCCTGATAA 17918 || || | ||| || | | ||| | ||||| || |||||| || | | Sbjct 723 GTGTCCAGCGCCTGACGGATCAGGCAGGCATCACGGATGCGCGTCTGGAAGTCGGGGAAC 782 Query 17919 CGCGCCCACAGATCCAGCGTTTTGTAGCGGATATAAAAATCGAAGTTAATCTGGTCGCAT 17978 ||||||||| |||||| | |||||| | | |||||||| |||||| |||| Sbjct 783 TGCGCCCACATGTCCAGCTTGGCGTAGCGCAGAACGGTGTCGAAGTTGTTCTGGTTGCAT 842 Query 17979 TCGTACTTGTTTGACGCCAGCTTCGAGAAGTCCTTCGGCTGACGC--TCGGTGCCACCGG 18036 ||||| | | ||||| | | ||| | || ||||| || ||| | || Sbjct 843 TCGTAACCGAACGCATCCAGCCCGGTGGGGTCGGT--GCCGACGCGTTCATCGCCGCTGG 900 Query 18037 CGGTGTCGGTGGTGCTGGCGATGGAGCCGGTGACACCAATACCAATTTTTTCCCCTTTCA 18096 ||||||||||| ||||| ||||||| ||| || | || ||||| | || |||| Sbjct 901 CGGTGTCGGTGTTGCTGCCGATGGAACCGCCCACGGTCAGGCCGATTTTCTGGCCCTTCA 960 Query 18097 TTTCGCTG-ACCGGCACAATGTTGATGCGGGTCAGAAAGTCAGAGGACTCCTGCATG-GT 18154 || || | ||||| ||||||||||||||| | || ||| | || ||||||||| | Sbjct 961 GTT-GCGGAACCGGGACAATGTTGATGCGGCTGAGGAAGGCGATGGCTTCCTGCATGCGC 1019 Query 18155 GTTCATCAGGGTCTGGGTGACCG-ACGGTTCAACGGTGAA 18193 ||| | ||| |||| | ||| || ||||||| |||||| Sbjct 1020 GTT-ACCAGCGTCT-GCTGAACGCTGGGTTCAATGGTGAA 1057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104435490476724