Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq1730 107 4e-19 seq1104 80.6 5e-11 >seq1730 Length=1430 Score = 107 bits (118), Expect = 4e-19 Identities = 530/822 (64%), Gaps = 45/822 (5%) Strand=Plus/Minus Query 11301 TTCACCGTTGAACCGT-CGGTCACCCAGACCCTGATGAACAC-CATGCAGGAGTCCTCTG 11358 |||||| ||||||| || ||| | |||| ||| | ||| | ||||||||| || | Sbjct 1057 TTCACCATTGAACCCAGCGTTCAGC-AGACGCTGGT-AACGCGCATGCAGGAAGCCATCG 1000 Query 11359 ACTTTCTGACCCGCATCAACATTGTGCCGGT-CAGCGAAATGAAAGGGGAAAAAATTGGC 11417 ||| || | ||||||||||||||| ||||| | || || |||| || | ||||| ||| Sbjct 999 CCTTCCTCAGCCGCATCAACATTGTCCCGGTTCCGC-AACTGAAGGGCCAGAAAATCGGC 941 Query 11418 ATCGGTGTCACCGGCTCCATCGCCAGCACCACCGACACCGCCGGTGGCACCGA--GCGCC 11475 | || ||| ||||||| ||||| ||||||||||||| | ||| || ||| | Sbjct 940 CTGACCGTGGGCGGTTCCATCGGCAGCAACACCGACACCGCCAGCGGCGATGAACGCGTC 881 Query 11476 AGCCGAAGGATTTTTCGAAGCTG---GCGTCCAGTAAGTACGAATGCGACCAGATTAACT 11532 || | || | |||| |||| | || ||||||||| |||||| |||| Sbjct 880 GGC--ACCGACCCCACCGGGCTGGATGCGTTCGGT---TACGAATGCAACCAGAACAACT 826 Query 11533 TCGATTTTTATATCCGCTACAAAACGCTGGACCTGTGGGCGCGTTATCAGGATTTCCAGC 11592 |||| | | |||||| | ||||||| ||||||||| | | || |||||| Sbjct 825 TCGACACCGTTCTGCGCTACGCCAAGCTGGACATGTGGGCGCAGTTCCCCGACTTCCAGA 766 Query 11593 TCCGTATCCGTAACGCCATTATCAAACGTCAGTCCCTTGATTTAATCATGGCCGGTTTTA 11652 || |||||| | ||| | | |||||| | || || || | || || | Sbjct 765 CGCGCATCCGTGATGCCTGCCTGATCCGTCAGGCGCTGGACACCATTTGCGTGGGCTTCA 706 Query 11653 ACGGCGTGAAGCGTGCCGAAACCTCTGACCGCAGCAGCAATCCGATGCTGCAGGATGTGG 11712 | ||| | |||| | ||| | |||||| | ||||||| |||| |||||| | Sbjct 705 ATGGCACCCACTATGCCAAGACCACCAACCGCACCGCCAATCCGCTGCTTCAGGATTT-- 648 Query 11713 CGGTC--GGCTGGCTGCAGAAATACCGCAATGAAGCCCCGGCGCGCGTGATGAGCAAGGT 11770 | || |||||||| ||| |||| | |||||||| | || | ||| |||| Sbjct 647 CAATCGTGGCTGGCTTCAGGCGATCCGCGACGAAGCCCCCGAACGGCTCATGGATGAGGT 588 Query 11771 CACTGACGAGGAAGGCCGCACGACCTCTGAGGTTATC---CGCGTGGGTAAGGGCGGTGA 11827 ||||| ||| ||| |||| | | ||| || |||| || Sbjct 587 ------CGAGGGCGGCAAGGTGACGGGCAAGGTCACCTATGGCGCGG---CGGGC---GA 540 Query 11828 TTATGCCAGCCTCGATGCACTGGTGATGGATGCAACCAACAACCTGATTGAACCG--TGG 11885 |||| ||| ||||| | |||||| ||| || | | || || ||| ||| Sbjct 539 CTATGACAGTCTCGACTCTCTGGTGTGGGACGCCAAGGAATCGCTCAT--GCCCGAATGG 482 Query 11886 TATCAGGAAGACCCTGACCTTGTGGTGATTGTGGGACGTCAGCTACTGGCGGACAAGTAT 11945 |||||||| || |||||||| ||||| ||||| || |||| || ||||||||| Sbjct 481 GTGCAGGAAGATCCCGACCTTGTCGTGATCGTGGGCCGCAAGCTGGTGCATGACAAGTAT 422 Query 11946 TTCCCCATCGTTAACAAGGAGC-AGGACAACAGCGAGATGCTGGCCGCTGACGTCATTAT 12004 ||||| || | ||| | | | | | || | ||| ||| |||| | | | || || Sbjct 421 TTCCCGCTCATCAAC-CGCACCGAAGGCAGCCTCGAAATGATGGCGCGTCAGGCAATCAT 363 Query 12005 CAGCCAGAAACGCA--TCGGCAACCTGCCGGCGGTACGCGTCCCGTACTTCCCGGCGGAT 12062 | | || | || | ||| |||||||| || |||||||| |||||||||||| | Sbjct 362 --GGCCGACATTCAGCTGGGCGGCCTGCCGGTGGAGCGCGTCCCCTACTTCCCGGCGAAG 305 Query 12063 GCGATGCTCATCACGAAGCTGGAAAACCTGTCCATCTACTAC 12104 | | |||||||| ||| |||||||| | |||||| Sbjct 304 TCCTTCCTCATCACCAAGTATTCGAACCTGTCGAAATACTAC 263 >seq1104 Length=3343 Score = 80.6 bits (88), Expect = 5e-11 Identities = 118/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 23139 GCGCTGGGACTGCGTGCCAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAAC 23198 |||||||| ||||| ||| | ||||||||| ||||||||| |||||| | ||||| Sbjct 2036 GCGCTGGGCCTGCGCGCCTATATCGACCAGACCGTGGGCTGGCACAAAACGATTTCCAAT 2095 Query 23199 GTCGGGGTAAACGGTGTTACCGGCATCAGCGCATCTGTATTCTGGGATTTGCAGGAGTCC 23258 || | | | | ||| ||||||||||| | || | ||||| || | || | Sbjct 2096 GTGGTGATTACCGGCGTTACCGGCATGGCCAAGGACGTGTCCTGGGCGATGGATGATGAC 2155 Query 23259 GGCACCGATGCTGACCTGCTGAACGAGTCAGGCGTCACAACGCTGAT 23305 |||||| || | ||||||||||| | || | |||| |||||||| Sbjct 2156 ACCACCGACGCGGCCCTGCTGAACGCGGCAAACATCACCACGCTGAT 2202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93434196967548