Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq701 242 5e-59 seq912 109 7e-19 >seq701 Length=18236 Score = 242 bits (268), Expect = 5e-59 Identities = 425/616 (69%), Gaps = 36/616 (6%) Strand=Plus/Plus Query 155894 GATGAAATCTATCAGTTTGCTGCTGACATGGGTGGTGCAGGTTTTGTTTTCACTGGAGAA 155953 ||||| | ||||| || |||||||| ||||| || ||||| | | |||| || ||||| Sbjct 6466 GATGAGGTTTATCAATTAGCTGCTGATATGGGAGGAGCAGGATATATTTTTACAGGAGAT 6525 Query 155954 AATGATGCTGCCATTATGCAGAACTCAGCAACAATTAACTTGAATATATTAGAACAACAA 156013 |||||||| ||||||| ||||| || |||||| | ||| || || | Sbjct 6526 AATGATGCAAATGTTATGCATAACTCGGCGCTCATTAACCTAAATGTAGTACAT------ 6579 Query 156014 AGAATATTAAATGAAAGTTTATCTGTAAACAAAACTAAAATATTCTACTCTGGTTCAGCT 156073 |||| | || ||| | ||| | | | ||||||| ||| || ||| Sbjct 6580 -GAATGTGCAA--AAAAT---------AACGTAGGAAGAGTATTCTATTCTTCATCTGCT 6627 Query 156074 TGTATGTATCCAGAACACAACCAACTTGATCCTAATAATCCTGACTGTCGTGAATCATCA 156133 |||||||||||||| || || || | |||||||||||||| ||||| ||| || Sbjct 6628 TGTATGTATCCAGAGCATAATCAGCAAGATCCTAATAATCCAAACTGTGAAGAAAGTTCT 6687 Query 156134 GCATATCCAGCAAACCCAGACTCAGAGTATGGATGGGAAAAACTCTTCTCCGAGCGTTTG 156193 || || || ||||| || || || || ||||| ||||||||||| || || || ||| | Sbjct 6688 GCTTACCCTGCAAATCCGGATTCTGAATATGGTTGGGAAAAACTTTTTTCAGAACGTCTT 6747 Query 156194 TATTTTTCTTATCACCGTAATTAT--GGTATACCTGTACGCGTCACTAGATACCATAACA 156251 ||||| ||| | | || ||| | || || ||| | || | |||| |||||| | Sbjct 6748 TATTTAGCTTTCAATAGAAACTATAAGTTAAAC--GTAAGAGTAGCAAGATTCCATAATA 6805 Query 156252 TCTATGGTCCTGAAGGCACTTGGGACGGAGGCAGAGAAAAAGCACCAGCAGCAATCTGTA 156311 | | ||| || || |||| || || | |||||| |||||||||||||| |||| Sbjct 6806 TTTTCGGTGAGTTTGGAACATGGGTGGGTGGTAAAGAAAAGGCACCAGCAGCAATGTGTA 6865 Query 156312 GAAAAGTAGCA-AGACTTCCTGGTGTAGGTGGTGG---TATAGAAGTATGGGGAGATGGA 156367 |||||| ||| | || | || |||||| |||||||| |||||||||||| Sbjct 6866 GAAAAGCTGCAGAAAC-------AGAAGATGGTGGCACAATAGAAGTTTGGGGAGATGGA 6918 Query 156368 CAACAAACAAGATCTTTCCTATACATTGATGAGTGTATAGAAGCATCAAGAAGATTGATG 156427 || ||||| | |||||| | | | |||| ||| |||||||| | ||||||||| Sbjct 6919 CAGCAAACGCGTTCTTTCTTGCATGTAAATGAATGTGTAGAAGCAGTACTTAGATTGATG 6978 Query 156428 ---GATTCTGATTTCATAGGACCTGTGAATATTGGTTCAGAAGAAATGGTGACTATCAAT 156484 | ||||||| |||| ||||| || || ||||||||||||||||| || |||||| Sbjct 6979 AGACAAGATGATTTCTTAGGGCCTGTAAACATCGGTTCAGAAGAAATGGTAACCATCAAT 7038 Query 156485 GAACTTGTAGAAAAGG 156500 || | | ||||| || Sbjct 7039 CAATTGGCAGAAATGG 7054 >seq912 Length=5817 Score = 109 bits (120), Expect = 7e-19 Identities = 213/308 (69%), Gaps = 14/308 (5%) Strand=Plus/Minus Query 158022 TTGCTAACACAAGATCTAGATTGAGAATGGTAACTCTATATCAGTTTGCAGGTCAGTATA 158081 |||| || || ||| |||||||||||| ||||| | ||| | || | || || | Sbjct 912 TTGCCAATACCAGAAGCAGATTGAGAATGTTAACTTTGTATTA--TTAC-GGACAAATCA 856 Query 158082 AAGG---TATAGTGGTTGGTACAGGTAATAAAGTAGAAGATTATGGGGTGGGTTTCTACA 158138 | || | | || ||| || || |||||||||||||||| ||| | ||||| || | Sbjct 855 ACGGACTTCTCGTTTGTGGAACTGGGAATAAAGTAGAAGATTTCGGGATTGGTTTTTATA 796 Query 158139 CCAAGTATGGAGATGGAGGTGTGGATATTGCGCCAATAGCAGATCTTTATAAGTCAGAAG 158198 |||| ||||| ||||| || || ||| || | || || |||||| | ||||| | |||| Sbjct 795 CCAAATATGGTGATGGTGGAGTAGATGTTTCACCGATTGCAGATTTGTATAAAACCGAAG 736 Query 158199 TGTGGAATCTAGGTAAG-GTTTTAGGTGT---AGATTCTAGAATCATAGAAGCAAAACCA 158254 | | | | || ||| | ||||| | | ||| ||| || | | | || | ||| Sbjct 735 TTTATGCT-TTGGCAAGAGCTTTAGATTTACCAGAATCT---ATTAAAAACGCCATTCCA 680 Query 158255 ACTGATGGATTATGGGATGATGGTAGAACAGATGAAGATCAATTAGGTGCTACATATTCA 158314 || |||||| | ||||||| | |||||| |||||| | ||| | || || || ||| | Sbjct 679 ACAGATGGACTTTGGGATGTGGATAGAACCGATGAACAACAAATTGGCGCAACGTATCCT 620 Query 158315 GAATTAGA 158322 ||||| || Sbjct 619 GAATTGGA 612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631408683397360