Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq1056 107 6e-19 >seq1056 Length=3914 Score = 107 bits (118), Expect = 6e-19 Identities = 238/349 (68%), Gaps = 10/349 (3%) Strand=Plus/Minus Query 39415 GCGGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTC 39474 ||| ||||||| | | || | || |||||| || || | ||| ||| || || | Sbjct 2357 GCGCGCCTTGAGCTTACCAAAGGTGATGATCTGCGCCACATGGTCCGCGCCATATTTG-C 2299 Query 39475 GGTG-ACGTACCGGATCACGTCGCCACGGCGACGGTCATCG---AAGTCGATGTCCACGT 39530 | || || || |||||||| ||||| || || || | ||| ||||||||||| | || Sbjct 2298 GCTGGACATAGCGGATCACCTCGCCGCGCCG-CGTT--TCGCAAAAGTCGATGTCGAAGT 2242 Query 39531 CGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGG 39590 ||||||| || || || || ||||| ||||| || || || | || || | | | | Sbjct 2241 CGGGCATCGACACACGTTCGGGGTTGAGGAAACGTTCAAACAGCAGACCCAGCCGCAGCG 2182 Query 39591 GGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCC 39650 | || ||||||||||| || || | || | || ||| || | ||||| |||| Sbjct 2181 GATCAAGGTCGGTGATGGTCAGCGCCCATGCCACAAGGCTGCCCGCACCCGAGCCGCGCC 2122 Query 39651 CAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGA 39710 | || || || | | |||| ||| ||||| ||| |||||||| |||| |||| Sbjct 2121 CCGGCCCCACGGGAATGTCATTCTGCTTGGCCCATTGGATAAAGTCGGCCACGATCAGGA 2062 Query 39711 AGTACGACGG-GAACCCCATCTGGTTGATCATGTCGATCTCGTAGTCGA 39758 |||| | ||| || ||||| ||||||| ||| | ||||| | |||| Sbjct 2061 AGTA-GCCGGCAAAACCCATGCGGTTGATGATGCCCGTCTCGAAATCGA 2014 Score = 87.8 bits (96), Expect = 6e-13 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 38572 CTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGAT 38631 ||| |||||||| ||||| || ||||||||||| | || || | ||| ||||| ||||| Sbjct 3155 CTTTTTGCCCATCGCGCGGCGCAGAAGGTCGGCATCGCCCAGCGAGTAGCCGGCAAGGAT 3096 Query 38632 CTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGT 38679 |||||| |||| | |||||| ||||| || | || | |||| |||| Sbjct 3095 CTGCGCGGCCTGCATCACCTGTTCCTGATAAACGAAAATCCCGTAGGT 3048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160235535913900