Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq1730 87.8 3e-13 >seq1730 Length=1430 Score = 87.8 bits (96), Expect = 3e-13 Identities = 272/411 (66%), Gaps = 10/411 (2%) Strand=Plus/Minus Query 4242 TGCAGGA-GTCATCCGCGTTTCTGCAGACG-ATTAATATTCTGCCGGTCGCAGAAATGAA 4299 ||||||| | |||| || || || ||| || || || ||| | ||||| | || |||| Sbjct 1014 TGCAGGAAGCCATC-GCCTTCCT-CAGCCGCATCAACATTGTCCCGGTTCCGCAACTGAA 957 Query 4300 GGGTGAGAAAATCGGCGTCGGTGTGACCGGTACTATCGCCAGCACGACTGATACCTCGGG 4359 ||| ||||||||||| | ||| |||| | |||| ||||| || || ||| | | Sbjct 956 GGGCCAGAAAATCGGCCTGACCGTGGGCGGTTCCATCGGCAGCAACACCGACACCGCCAG 897 Query 4360 CGATGATGAGCGTAAGACCGCA--GACTTCACCGCGCTTGAATCCAACAAGTACGAGTGC 4417 || ||||| || | | ||| ||| ||||| ||| || | | ||||| ||| Sbjct 896 CGGCGATGAACGC--GTCGGCACCGACCCCACCGGGCTGGATGCGTTCGGTTACGAATGC 839 Query 4418 GACCAGATTAACTTTGACTTCCACCTGAACTATAAAACCCTCGACCTGTGGGCGCGTTTT 4477 |||||| ||||| ||| | ||| ||| | || ||| ||||||||| || Sbjct 838 AACCAGAACAACTTCGACACCGTTCTGCGCTACGCCAAGCTGGACATGTGGGCGCAGTTC 779 Query 4478 CAGGACTTCCAGCGCCGCATCCGCGACGCCATTGTCAAGCGTCAGGCGCTCGATTTCATC 4537 | ||||||||| |||||||| || ||| | | ||||||||||| || ||| Sbjct 778 CCCGACTTCCAGACGCGCATCCGTGATGCCTGCCTGATCCGTCAGGCGCTGGACACCATT 719 Query 4538 ATGGCCGGTTTTAACGGTACCACCCGCGCCGCCACCTCTGACCGCACCAAAAATCCGATG 4597 | || || || || ||| | ||| ||| | |||||||| |||||| || Sbjct 718 TGCGTGGGCTTCAATGGCACCCACTATGCCAAGACCACCAACCGCACCGCCAATCCGCTG 659 Query 4598 CTGCAGGATGT-GGCCGTCGGCTGGCTGCAGAAATACCGCAATGAAGCCCC 4647 || |||||| | ||| |||||||| ||| |||| | |||||||| Sbjct 658 CTTCAGGATTTCAATCGT-GGCTGGCTTCAGGCGATCCGCGACGAAGCCCC 609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95021352750140