Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq1055 98.7 3e-16 >seq1055 Length=3925 Score = 98.7 bits (108), Expect = 3e-16 Identities = 156/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 18116 CGGCAATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGA 18175 || |||||| |||||||| ||| | || || | ||| ||||| | | |||| || Sbjct 2802 CGACAATCGCGTCAATGAAATCTCGGAAATTTCGCGCGGTTTGAAAACCTTGGCCAAGGA 2861 Query 18176 GCTCGATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAG-AGCAGAGAGG 18234 || || | | || | ||||| ||||| | || || || || ||| | |||| Sbjct 2862 ACTGCATGTTCCGGTGATCGCCCTGTCCCAGCTCAGCCGTGCGGTGGAACAGC-GCGAGG 2920 Query 18235 ATAAGCGACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACA 18294 | ||||| || | || || ||||||||||| ||||| |||||||||||||||| || | Sbjct 2921 ACAAGCGGCCCCAGCTTTCCGACCTTCGCGAATCCGGCTCGATCGAGCAGGACGCGGATA 2980 Query 18295 TGATCGCGTTCTTGTTCCGTGAGGCCTACTACCTCGAACGC 18335 || || |||| ||||||| |||| ||| ||| || || || Sbjct 2981 TGGTCTGGTTCGTGTTCCGCGAGGACTATTACGTCAAAGGC 3021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162520272262228