Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq711 129 5e-25 seq336 84.2 2e-11 >seq711 Length=17244 Score = 129 bits (142), Expect = 5e-25 Identities = 241/352 (68%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 126090 TAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCCACATTCTTTT 126149 |||||||| |||||||||| ||||| | | || || || || | | |||| ||| Sbjct 10175 TAAATATGAACATCTCCAAAAGTATGCACATAATCTCCTACTTCTAATTCACAAACTTGC 10116 Query 126150 GCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATATA 126209 || || | || || |||||||| ||||| || ||||| || || ||||||| | Sbjct 10115 GCCACCATCATACACAACAATGCATAACTCGCAATGTTAAAAGGGACGCCCAAAAATACA 10056 Query 126210 TCAGCACTTCTTTGATATAATTGACAATTTAATTTACCCTCTTGTACGTAAAATTGAAAC 126269 ||||||||||||||||| ||||| ||||| || ||| ||| ||||| |||||| Sbjct 10055 TCAGCACTTCTTTGATACAATTGTAGTGACAATTTTCCATCTGCTACATAAAACTGAAAC 9996 Query 126270 ATTGTGTGGCAAGGTGGTAATGCCATTGAATCG--ATTTCAGTAGGATTCCATGCTGAAA 126327 | || || ||||| | ||| ||||| | | | ||||| | | |||||| || |||| Sbjct 9995 AATGCATGACAAGGCGCTAAAGCCAT--ATTTGGAATTTCGGCTGCATTCCAAGCAGAAA 9938 Query 126328 CAATGTGACGTCGAGAGTTTGGATTGGTTTTAATTTGTTGTATAACTGATTTTAATTGAT 126387 | || | | || ||| | ||||| | || ||||| | || || | | ||| | Sbjct 9937 CGATAAGTCTTCTAGAATCAGGATTTTTCTTGATTTGCTCTACTACCTCTACGATTTGGT 9878 Query 126388 CGTAATGATTTCCATTTTTATCTTCCCAATCTCTCCATTGTTTACCATAAAC 126439 | ||||||| ||| |||||||| |||||||||| || ||||| Sbjct 9877 CTACCACTTTTCCATCTTTGCCTTCCCAAGTTCTCCATTGTGCTCCGTAAAC 9826 >seq336 Length=64408 Score = 84.2 bits (92), Expect = 2e-11 Identities = 240/361 (66%), Gaps = 16/361 (4%) Strand=Plus/Plus Query 125973 AATTCTAAATCTTCATAATTAATATCAAA--AATTGATTTATCTGTATTAATTTTTAATT 126030 ||||| |||||||||||| || |||||| || | ||| || | ||||||||| Sbjct 40342 AATTCAAAATCTTCATAAGTATAATCAAACAAACTCTTTTTACTTT--TAATTTTTA--- 40396 Query 126031 GAGGTGGTA---GATAACTATCTCTTGATAATTGTGTATGTATTGCATCCATATGATTGG 126087 || || | |||| ||||| | || | | | || ||||||| |||||| Sbjct 40397 GAATCGGAAAAGGATATGGTACTCTTTCAATTTATCTCTTTAAAGCATCCACATGATTAC 40456 Query 126088 AATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCT-CAAGTCCACATTCT 126146 ||| ||||||| ||| || ||| ||||| ||||| |||| | ||| | |||||| Sbjct 40457 TATAGATATGTGTATCCCCTAATACATGAACAAATTCTCCCAAATTCAAATT-ACATTCC 40515 Query 126147 TTTGCAACAAGATGT--GTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAA 126204 || || ||| || | || || || |||||||| || ||||| || |||| || ||| Sbjct 40516 TTAGC--CAACATTTAAGTAAGCAATGCATAACTAGCTATATTAAATGGAATTCCCAAAC 40573 Query 126205 ATATATCAGCACTTCTTTGATATAATTGACAATTTAATTTACCCTCTTGTACGTAAAATT 126264 | |||| ||| | ||| | |||| | ||||| || | | || |||||| Sbjct 40574 CAAAATCACATGATCTCTAATACATCATACAACTCAATTTCCCATTTGCGACAAAAAATT 40633 Query 126265 GAAACATTGTGTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGATTCCATGCTG 126324 ||||| || || || |||||||||||| | | | ||| | |||||||| || | Sbjct 40634 ATGACATTACATGACATGGCGGTAATGCCATTTATTTTAAATCACTTGGATTCCAGGCAG 40693 Query 126325 A 126325 | Sbjct 40694 A 40694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408586717405622