Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq128 93.3 3e-14 seq507 87.8 1e-12 seq114 87.8 1e-12 seq13 87.8 1e-12 seq260 86.0 4e-12 >seq128 Length=150569 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||| ||| | ||||| ||||||||||| |||||||| || |||||||| || || || | Sbjct 57832 TAATATGTAAATTTTTGTTAAAACCCTGACGGGAAAGACCATCACTCTTGATGTAGAGCC 57891 Query 23667 CACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 | || || |||| | |||| | || ||| || |||||||| | || || | Sbjct 57892 TTCAGATACAATTGATGCTGTTAAGGC-TAAGATTTAAGATAAAGAAGGAATTCCACCTG 57950 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 || || | | || || ||||| || || ||||| ||||| | | | ||| | |||| Sbjct 57951 ATTAATAAAGATTGATTTTTGCAGGAAAGCAACTCGAAGATGGAAGAACTCTTTCAGATT 58010 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 | || || ||||||| || || | |||||||| ||||| Sbjct 58011 ATAATATTTAAAAAGAATCAACTCTCCATTTAGTATTAAG 58050 >seq507 Length=36014 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 ||||| | ||||||||||| ||| | || |||||||| |||||||| || ||||| | Sbjct 35486 AAATGTAAATTTTCGTTAAGACCTTGACTGGAAAAACCATCACTCTTGATGTTGAACCAT 35545 Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 | |||||| |||| | || |||||| ||||| ||||| | || || ||| Sbjct 35546 CAGACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATT 35605 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTA 23786 || | | | || ||||| || || || | ||||| | | | |||||| ||||| Sbjct 35606 AATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTT--CAGATTA 35663 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| |||| || || || | || ||||| || || ||| |||| || Sbjct 35664 TAACATTTAAAAGGAATCAACTCTCCACTTAGTCTTGAGATTGAGAGGTGG 35714 >seq114 Length=165420 Score = 87.8 bits (96), Expect = 1e-12 Identities = 165/240 (69%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 23603 TACTTAAA--ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGT 23660 || ||||| ||||| ||||| |||||||| | || || ||||| |||||||| || || Sbjct 163798 TATTTAAACTATGCAAATTTTTGTTAAAACATTAACCGGTAAAACCATCACTCTTGATGT 163739 Query 23661 TGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACC 23720 ||| | | |||||| |||| | || |||||| ||||| ||||| | || Sbjct 163738 TGAACCATCAGACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCC 163679 Query 23721 GCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTA 23778 || ||| || | | | || ||||| || || || | ||||| | | | |||||| Sbjct 163678 ACCTGATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTC 163619 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | |||| ||||| |||| || || || | ||||||||||| || || |||| ||| Sbjct 163618 AG--ATTATAACATTTAAAAGGAATCAACTCTCCATTTAGTTTTGAGATTAAGAGGTGGA 163561 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 ||||| | ||||| |||||||| | || || ||||| |||||||| || ||||| | Sbjct 143883 AAATGAAAATTTTTGTTAAAACATTAACTGGTAAAACCATCACTCTTGATGTTGAACCAT 143942 Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 | |||||| ||||| | | ||||||| ||||| ||||| | || | ||| Sbjct 143943 CAGACACTATTGAAGCTGTCGAGGCAAAAATTTAAGACAAGGAAGGAATCCCACTTGATT 144002 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTA 23786 || | | | || ||||| || || || | ||||| | | | |||||| | |||| Sbjct 144003 AATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAG--ATTA 144060 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| |||| || || || | ||||||||||| || || |||| ||| Sbjct 144061 TAACATTTAAAAGGAATCAACTCTCCATTTAGTTTTGAGATTAAGAGGTGGA 144112 Score = 82.4 bits (90), Expect = 5e-11 Identities = 171/252 (68%), Gaps = 7/252 (3%) Strand=Plus/Minus Query 23592 TGACAATTAATT---ACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGAT 23648 ||| |||||||| | | ||||| | || || || ||||| | || ||||| || || Sbjct 164531 TGATAATTAATTTTAAATAGAAATGTAAATATTTGTAAAAACATTAACTGGAAAGACTAT 164472 Query 23649 CACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAA 23708 |||||| || ||||| | | |||||| |||| | || |||||| ||||| Sbjct 164471 CACTCTTGATGTTGAACCATCAGACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAA 164412 Query 23709 AGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGA 23768 ||||| | || || ||| || | | | || ||||| || ||| || | ||||| | Sbjct 164411 GGAAGGAATCCCACCTGATTAATAAAGACTCATTTTTGCAGGAAAATAATTAGAAGATGG 164352 Query 23769 ACG--CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGG 23826 | | |||||| | |||| ||||| |||| || || || | ||||||||||| || Sbjct 164351 AAGAACACTTTCAG--ATTATAACATTTAAAAGGAATCAACTCTCCATTTAGTTTTGAGA 164294 Query 23827 TTGCGAGGAGGA 23838 || |||| ||| Sbjct 164293 TTAAGAGGTGGA 164282 >seq13 Length=521119 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||| ||| | ||||| ||||| |||||||| || || || ||||| || || ||||| | Sbjct 46250 TAATATGTAAATTTTTGTTAAGACCCTCACAGGCAAGACCATCACACTTGATGTTGAGCC 46191 Query 23667 CACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 |||| || | || | |||| |||| | | ||||||||||| | || || | Sbjct 46190 ATCGGATACCATCGATGCTGTTAAGGCAAAGATCTAA-GACAAAGAAGGAATCCCTCCTG 46132 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 || || | | ||||| ||||| || || || | || || | | | ||| | |||| Sbjct 46131 ATTAATAAAGATTAATTTTTGCTGGAAAGTAATTAGAGGATGGAAGAACTCTTTCTGATT 46072 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | ||||| ||||||| || ||| | |||||||| || || | ||||||| Sbjct 46071 ATAACATTTAAAAAGAATCAACACTTCATTTAGTATTGAGACTCAGAGGAGG 46020 >seq260 Length=80851 Score = 86.0 bits (94), Expect = 4e-12 Identities = 170/245 (69%), Gaps = 10/245 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||| | ||||| ||||||||||| || ||||| || |||||| | || ||||| |||| Sbjct 28014 ATGTAAATTTTTGTTAAAACCCTTACAGGAAAGACAATCACTTTAGATGTTGA-TCCAGA 28072 Query 23671 G-ACACTGTTGA--AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| |||| || | ||||| ||| | | | || ||||| | || || ||| Sbjct 28073 TCACACCATTGATGAAGTTAAAAACTAAATCTAGA--ATAAGGAAGGAATTCCACCTGAT 28130 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA--CTTTAGGCGATT 23785 || | | | || ||||| || || || | ||||| | | | | |||| | ||| Sbjct 28131 TAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAAAGCTTTCAG--ATT 28188 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAG 23845 | || || |||| || || |||||||| ||||||||||| ||| ||||||| | | | Sbjct 28189 ATAATATCTAAAAGGAATCAACATTACACTTAGTTTTAAGATTGAGAGGAGGTTAATGAT 28248 Query 23846 TTAAA 23850 ||||| Sbjct 28249 TTAAA 28253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337999935671768