Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq25 248 7e-61 seq253 206 2e-48 seq563 84.2 2e-11 >seq25 Length=399112 Score = 248 bits (274), Expect = 7e-61 Identities = 526/780 (67%), Gaps = 9/780 (1%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||| ||| ||||||||| || |||| ||||||||||||||||||| |||| ||| Sbjct 189015 AACTCCAGCTTTTTGGTAATCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAA 188956 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 || || | ||||| | ||||| ||||| ||| || ||| ||| | || Sbjct 188955 GGAGATCATATCCATCCATTCAAAAGGATTCTTTGAATTATAAATTTTAGGAGCTCCTAA 188896 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 || | | |||| || ||||||||||| ||||| | |||| | | | || || Sbjct 188895 TGCAAATATTAATCTATCTGCTACAAATTCAATATATTATTTCATTAAATTAGAATTCAT 188836 Query 4427 TCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 |||||||||| || ||||| || | | | ||| |||| ||| || || || Sbjct 188835 TCCAATTAATTCAACTGGTAGAGCTTCACTGATAAATTCTTTTTCAATTTCAACAGCAGA 188776 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAA--GTATCCAAACAAT 4544 || || || || | ||| | ||| | |||||| ||||| || | ||| || Sbjct 188775 TGAAATAATTTCATGAATTCGTTAATTACTTAATTTATTAACTAAATGTTTGTAAAGAAG 188716 Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 | || || || || ||| | |||||| ||||| ||| | ||| || ||||| || Sbjct 188715 A--CAAGCGAAGTCTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTG 188658 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 | ||| ||||| || ||| ||||| | |||||||||||| |||||| ||||||||| Sbjct 188657 AGTCCAGGCATCAATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAG 188598 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 || |||||||| || | ||||| || | ||||| | || || | || | Sbjct 188597 AAAATGCCTTCAACAGAAGCAAAGGCAATTAATCTTTCAGCAAATGA---ATCATTATTA 188541 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCAC-GGAATTGTGTATATAGC 4783 ||||||||||| | |||||| | ||||| || |||| || || | | | |||||| Sbjct 188540 TTAATCCATTTCATTGCCCACATTGCTTTCTT-TTAAATTACAGGCACATTATCTATAGC 188482 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 | | | | |||||||| | || ||||| || || || | || ||| Sbjct 188481 ATGGAGAAGATAGTTTTTTTCATTTTCATCAGTTATATAGGTATCAATCAAAAGTGAATA 188422 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 |||||||||| ||||| || ||||| || | |||||| ||||| ||||||||||| | Sbjct 188421 TGTTTCAGAATGAATATTCTCCATAGCCATTTAAAATCCATAAAAACATCTAGCTTCAGG 188362 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 ||||| ||||| |||| ||| || | |||||||| ||||||||||| ||||| || Sbjct 188361 AACTTGTACTTCTGTACAGAATTATTAAGCCAAGTTTTCATTTACTATACCATCACTTGC 188302 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 |||||| || || | |||| ||||||| || ||| || | | ||||||| ||| Sbjct 188301 TGCAAAGAAAGCAAGGACATACTTAATAAAGTGCTTTTCATCTGAGGTGAGTTTTTCCCA 188242 >seq253 Length=82967 Score = 206 bits (228), Expect = 2e-48 Identities = 498/750 (66%), Gaps = 13/750 (2%) Strand=Plus/Minus Query 4279 TTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAG 4338 ||||||| ||||||||||| |||| ||| || || | ||||| | ||||| ||||| Sbjct 29895 TTTCGAAAAAATTAGTTTTACCTTGTAAAGATATCATATCCATCCATTCAAAAGGATTCT 29836 Query 4339 TTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTA 4398 ||| || ||| ||| | || || | | |||| || || |||||||| | Sbjct 29835 TTGAATTATAAATTTTAGGAGCTCCTAATGCAAATATTAATCTATCTGCAACAAATTCAA 29776 Query 4399 TATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCA 4458 |||| | |||| | | | || || ||||||||| || | || || | | | Sbjct 29775 TATATTATTTCATCATATTAGAATTCATACCAATTAATTCTACTGATAAAGCTTCACTAA 29716 Query 4459 AAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATG 4518 ||| |||| ||| || || || || ||||| || | ||| | | ||| | Sbjct 29715 TAAATTCTTTTTCAATTTCAACAGCAGATGAAATTATTTCATGAATTCTTTAATTACTTA 29656 Query 4519 GTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTC 4578 |||||| | ||| | | | | || ||| || || || ||| | |||||| |||| Sbjct 29655 ATTTATTGATTAAATGTTTGTAAAGTAGACAAGCGAAGTCTGTATGAAGACCTTCATCTC 29596 Query 4579 TGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAA 4638 | ||| | ||| || ||||| || | ||| ||||| || ||| ||||| | ||| | Sbjct 29595 TTGAAATTAATTCATTTGAAAATGTGAGTCCAGGCATCAATGATCTTTTTTTTATCCAGA 29536 Query 4639 ATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATC 4698 | || || |||||| |||||||||||||| ||||| || | ||||| || | ||||| Sbjct 29535 AAATGGCACAAAATGAACCAGAAAAGAATATACCTTCAACAGAAGCAAAAGCAATTAATC 29476 Query 4699 GGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCT 4758 | || || | || || ||||||||||| | ||||| | || || || | Sbjct 29475 TTTCAGCAAATGAAT---CATTATCATTAATCCATTTCATAGCCCACATTGCCTTCTTTT 29419 Query 4759 ---TAAC--GCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTC 4813 |||| |||| ||| | ||| || | || || | | |||||||| | || Sbjct 29418 GTATAACAGGCAC---ATTATCAATA--GCATGAAGTAGATAATTTTTTTCATTTTCATC 29364 Query 4814 TTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAAT 4873 || ||||| || || | ||| ||| |||| ||||| ||||| || ||||| | Sbjct 29363 AGTTATGTAAGTATCAATCAATAGTGAATAGGTTTCTGAATGAATATTCTCCATAGCTAA 29304 Query 4874 CTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTAC 4933 || |||||| || || ||||||||||||| |||| |||||| |||||||| || | Sbjct 29303 CTAAAATCCATAGAAACATCTAGCTTCTGGAACTTAAACTTCTGTACAAAATTATTAAGC 29244 Query 4934 TAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAA 4993 |||||||| || || ||||| ||||| |||||||| || || | |||| ||||| Sbjct 29243 CAAGTTTTCATTCACAATACCATCACTAGCTGCAAAGAAGGCAAGTACATACTTAATAAA 29184 Query 4994 GTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 | || ||| || | ||||||||| ||| Sbjct 29183 ATGCTTTTCATCTGAGGTAAGTTTTTCCCA 29154 >seq563 Length=30168 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 31822 AGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGA 31881 ||||||| | |||||||| |||| |||| | ||||| || || ||||| |||||||| || Sbjct 771 AGCTCCTCGTTCTGGATTAGCAGCTAAAAATTTTATAGATGTTGGTGCTGGTGTTATTGA 712 Query 31882 TTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAG 31941 | ||| || |||||| | | | || | || |||||||||||||| || | || Sbjct 711 TGAAGATTACAGAGGAGAAATATGTGTTTTATTATTTAATTTTGGAGATAACGATTTCAA 652 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATT 31975 |||| | || ||||| | |||||| | ||| Sbjct 651 AGTAAATTATGGAGATAGAATTGCTCAAATGATT 618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427037389851218