Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq1286 89.7 8e-13 seq1005 84.2 3e-11 >seq1286 Length=2417 Score = 89.7 bits (98), Expect = 8e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 826 TGTAGCTCAGTTGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 767 Query 2770 TCAGTCCTGCCA 2781 ||| || |||| Sbjct 766 TCACTCGCGCCA 755 Score = 89.7 bits (98), Expect = 8e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 937 TGTAGCTCAGTTGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 878 Query 2770 TCAGTCCTGCCA 2781 ||| || |||| Sbjct 877 TCACTCGCGCCA 866 >seq1005 Length=4377 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 2711 GTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCGT 2770 |||| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 1691 GTAGTTCAGTTGGTTAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCGT 1632 Query 2771 C 2771 | Sbjct 1631 C 1631 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 2711 GTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCGT 2770 |||| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 1797 GTAGTTCAGTTGGTTAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCGT 1738 Query 2771 C 2771 | Sbjct 1737 C 1737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788296882516000